Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1532 ATGGCCAGGCCTCAACAACGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGCGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGAGCATCAGCCTTTTGTGACTCTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTGCCACCGTCTCCGGCGTTTTGA 495 48.48 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETEHQPFVTLEEDHIEQMIEELIHYGSVELCSIVPPSPAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26979231 26979818 + CcPI632755_08g015320.1 Cco08g1532 186006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1532 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 110 IPR050913 -
Cco08g1532 164 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cco08g1532 164 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1532 164 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1532 164 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Cco08g1532 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1532 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1532 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1532 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1532 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1884 Cco-Chr5:27879990 Cco08g1532 Cco-Chr8:26979231 1.10E-52 dispersed
Cco06g1292 Cco-Chr6:23095079 Cco08g1532 Cco-Chr8:26979231 6.40E-25 dispersed
Cco07g1322 Cco-Chr7:27300801 Cco08g1532 Cco-Chr8:26979231 8.90E-41 dispersed
Cco08g1532 Cco-Chr8:26979231 Cco09g0309 Cco-Chr9:2705837 1.00E-46 dispersed
Cco08g1531 Cco-Chr8:26971959 Cco08g1532 Cco-Chr8:26979231 1.60E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59822 PF00847 AP2 9.50E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1532 - - - 0.0