Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1532 | ATGGCCAGGCCTCAACAACGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGCGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGAGCATCAGCCTTTTGTGACTCTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTGCCACCGTCTCCGGCGTTTTGA | 495 | 48.48 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETEHQPFVTLEEDHIEQMIEELIHYGSVELCSIVPPSPAF | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26979231 | 26979818 | + | CcPI632755_08g015320.1 | Cco08g1532 | 186006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1532 | 164 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 110 | IPR050913 | - | |
Cco08g1532 | 164 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Cco08g1532 | 164 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1532 | 164 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1532 | 164 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 66 | - | - | |
Cco08g1532 | 164 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1532 | 164 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1532 | 164 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1532 | 164 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1532 | 164 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1884 | Cco-Chr5:27879990 | Cco08g1532 | Cco-Chr8:26979231 | 1.10E-52 | dispersed | |
Cco06g1292 | Cco-Chr6:23095079 | Cco08g1532 | Cco-Chr8:26979231 | 6.40E-25 | dispersed | |
Cco07g1322 | Cco-Chr7:27300801 | Cco08g1532 | Cco-Chr8:26979231 | 8.90E-41 | dispersed | |
Cco08g1532 | Cco-Chr8:26979231 | Cco09g0309 | Cco-Chr9:2705837 | 1.00E-46 | dispersed | |
Cco08g1531 | Cco-Chr8:26971959 | Cco08g1532 | Cco-Chr8:26979231 | 1.60E-53 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59822 | PF00847 | AP2 | 9.50E-12 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1532 | - | - | - | 0.0 |