Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1543 ATGCTTTACTCTAGTCACATCCTGGATGGTGTCTGCTTTCTCCACTGTATTCTGCGAGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGCTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGGAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAA 237 44.3 MLYSSHILDGVCFLHCILRVSLLTDNGSTKDDLRLPTDESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 78
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27122943 27123391 + CcPI632755_08g015430.1 Cco08g1543 186017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1543 78 FunFam Eukaryotic translation initiation factor 5A 19 76 - -
Cco08g1543 78 SUPERFAMILY Nucleic acid-binding proteins 20 74 IPR012340 -
Cco08g1543 78 SMART eIF_5a_2 13 72 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cco08g1543 78 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 20 72 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cco08g1543 78 Gene3D - 18 77 IPR012340 -
Cco08g1543 78 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 20 75 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1543 K03263 - - csv:101211156 117.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1428 Cco-Chr6:24805723 Cco08g1543 Cco-Chr8:27122943 9.90E-23 dispersed
Cco05g1864 Cco-Chr5:27525561 Cco08g1543 Cco-Chr8:27122943 2.40E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g573 . Blo12g01052 Bda01g00663 Bda03g00098 Bpe02g01262 Bpe02g00536 Bma04g00091 Bma01g02174 Cmo05g00354 . Cma01g01640 Cma05g00350 Car09g00361 . Sed07g1964 . Cpe06g00296 Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01681 Cam05g1796 Cec05g1805 Cco05g1864 Clacu05g1783 Cmu05g1669 Cre05g1798 . . Cone17ag0983 Cone20ag0323 Lsi04g01336 . . Cme03g01578 Blo17g00003 . Bda01g01013 . Bpe14g00600 Bpe04g00082 Bma01g01263 . . Cmo01g01713 Cmo09g00416 Cma09g00559 . Car01g01279 Car05g00295 Cpe11g00295 Cpe02g00325 Bhi09g02433 . . . . . . Cla08g01366 Cam08g1835 Cec08g1413 Cco08g1543 Clacu08g1530 . Cre08g1314 Lsi08g01248 . Chy03g01084 Cme07g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022587 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 3