Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1544 ATGGAAGAAGGTGCCACGTGGGAAGCTATAATTGAGTGGTCAGAAATAGAGCTGCTACACGAGATCTTCAGCGAATCAGATGAATTAAAAGCAAAGGCGGCTGCAATTTATGATAGGGTTTTCCAGTTACAGAGAGAAGAAGAAGATGTCTCTTTCTCTTTCTCTATCTGTAATGCTGCTGCTACTACTCGCCTACTACTAGTTCTTGTGGTAACCGTTTTGTTTTTGATATTGTCATCGAAGATGAAGTTCATGAAGTTGGGATCAAAACCAGACGCCTTTCGAGCCGATGGAAAAACTACTCGGTATGTATCATCTGAATTGCCAACGGACGTTACCATTTTTGTGGGCGAAGTAAAGTTTCTTGTTCATAAGTTTCCTCTGTTGTCCAAGAGCAATTGCTTGCAGAAACTAGTATCAAAAGCCAATGAGGAGAGTTCTGAAGAAATTCATCTGATTGATTTCCCTGGTGGACCTAAGTCATTTGAAATCTGTGCAAAGTTTTGCTATGGAATGACTGTTACTCTTAATGCCTATAATGTAGTGGCTGCTCGTTGTGCAGCAGAATTTCTCGAAATGACAGAGGACGTTGAAAGAGGAAATCTTGTATTTAAAATTGAGGTGTTCCTAAACTCGAGCATCTTCCGTAGTTGGAAAGACTCCATCATTGTGCTCCAAACAGCCAAATCTCTTCTTCCGTGGTCTGAAGATCTGAAGATTGTTGGGAGATGTATTGATTCAATTGCCTCAAAAACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATATAACAGGAAACTAGCAGAGGCTGATAGAATTGTAGAAGATGGAATCAAGTACCAAAAGAAAATTGACTCTGTACCAAACGATTGGTGGGTTGAAGATGTTTGTGAGCTAGAGATTGATCTGTATAGGCGTGTTATGATTGCTGTGAAATCAAAGGGCAGAATGGATGGTTCTGTCATTGGGGAGGCGCTTAAAACTTATGCTGTTAGATGGTTACCAGACACTGTAAATGCTTTGGCCTCTGATGCACATATTAAGAGGAACAGATCTCTAATTGAAACAATCATTTGCTTATTACCATCTGACAGAAACATAGGTTGCTCATGCAGTTTCTTGCTCAAACTCATGAAGGTTGCCATTTTGGTTGGAGCTGAGGATGCATTGAGGGAGGATTTGGTGAAGAGAATTGGCTTGAAGCTGCATGAGGCTTCAGTTAAAGATTTATTGATTCTAGCACAATCCCCCCAAGTTACAAGATATGATATTGAATTGGTTTATAGGATTGTGAATCAGTATTTTGTTCATCAAAAGTTAAATCGAAATACCGACGTTATCGAGAGGAGCGAGAAAGGGGCTGAAAATCTTTTACTGGGGCATGGGTCCTCGTTGAATGTAGCTAAACTGATTGACGAGTATCTTGCTGAAATTGCAGATGACCCTAATCTCTCACTCACTAGTTTCATCGACTTATCACAGTCTATTCCTGAATTTGCAAGGCCAATACATGATAGATTATATAAAGCAATTGACATGTATCTTAAGGTGCACCCAGGTTTGACAAAAGCTGATAAGAGGAAGATATGTGGTCTGATTGATGTCAAGAAACTTACAACGGAGGCATCGATGCACGCAGCGCAGAATGAACAGCTCCCGCTTAGAGTTGTAGTTCAAGTTCTCTTCTTTGAACAGGTTAGAGCCTCGGTTAGCATCGAAGCGCAAAATAACTCGCGAGACTCTTCCAGTGTAATGACAAGCATAGATGAAGAATGCCCAAAGGAGTTGGACAGCTGCAAGTCTCTCAAACACAATATGGGGCACATGAAGATAAGTGAAGACATTCAGAAAACGAAGAAGTTAGCTACGAAGAGCAGCAAGAACAGTAGAAGTGGTATGCAACTGTTGCCGTCAAGGTCGAGGAGAATTTTCGATAAGTTATGGATCATGGGTAAAGGGCATGGGGAGAGTCGGAGTCCCGAAACATCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCTGGAGATATGAAATCTTCTGGTTCATATACAAGACAGAGGAGGCACTCAATATCTTAG 2085 41.34 MEEGATWEAIIEWSEIELLHEIFSESDELKAKAAAIYDRVFQLQREEEDVSFSFSICNAAATTRLLLVLVVTVLFLILSSKMKFMKLGSKPDAFRADGKTTRYVSSELPTDVTIFVGEVKFLVHKFPLLSKSNCLQKLVSKANEESSEEIHLIDFPGGPKSFEICAKFCYGMTVTLNAYNVVAARCAAEFLEMTEDVERGNLVFKIEVFLNSSIFRSWKDSIIVLQTAKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLAEADRIVEDGIKYQKKIDSVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRNIGCSCSFLLKLMKVAILVGAEDALREDLVKRIGLKLHEASVKDLLILAQSPQVTRYDIELVYRIVNQYFVHQKLNRNTDVIERSEKGAENLLLGHGSSLNVAKLIDEYLAEIADDPNLSLTSFIDLSQSIPEFARPIHDRLYKAIDMYLKVHPGLTKADKRKICGLIDVKKLTTEASMHAAQNEQLPLRVVVQVLFFEQVRASVSIEAQNNSRDSSSVMTSIDEECPKELDSCKSLKHNMGHMKISEDIQKTKKLATKSSKNSRSGMQLLPSRSRRIFDKLWIMGKGHGESRSPETSGSSQSPTSVVPGDMKSSGSYTRQRRHSIS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27123941 27129342 - CcPI632755_08g015440.1 Cco08g1544 186018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1544 694 MobiDBLite consensus disorder prediction 614 694 - -
Cco08g1544 694 Gene3D Potassium Channel Kv1.1; Chain A 97 203 IPR011333 -
Cco08g1544 694 ProSiteProfiles BTB domain profile. 110 178 IPR000210 GO:0005515(InterPro)
Cco08g1544 694 PANTHER OS12G0117600 PROTEIN 106 631 IPR043454 -
Cco08g1544 694 MobiDBLite consensus disorder prediction 660 694 - -
Cco08g1544 694 ProSiteProfiles NPH3 domain profile. 292 569 IPR027356 -
Cco08g1544 694 Pfam NPH3 family 292 545 IPR027356 -
Cco08g1544 694 CDD BTB_POZ_NPY3-like 102 205 - -
Cco08g1544 694 Pfam BTB/POZ domain 107 196 IPR000210 GO:0005515(InterPro)
Cco08g1544 694 SUPERFAMILY POZ domain 101 196 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1544 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1544 Cco-Chr8:27123941 Cco10g1018 Cco-Chr10:21864758 7.10E-150 dispersed
Cco08g1544 Cco-Chr8:27123941 Cco04g1506 Cco-Chr4:30498105 2.10E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42