Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1549 ATGGCTGGTTTCTCAAGAGCTCTGTTTCTTCTCACCTTCCTCCTCTTCAGCTTCTCAGAAGCTAGAGAGATATTGGTCGGAGGCAAATCCGACGCCTGGAAAATCCCTTCTTCTCAATCTCAATCGCTCAATCAATGGGCTGAAGCCTCCCGCTTTCGCATCGGCGACACTCTCGTGTGGAATTACGAAGAAGGGAAAGATTCGGTACTCAAAGTGAGGAAGGAAGATTACGAAGCCTGCAATACCGAAAACCCAGAACAGAGATTTGAGGACGGGAATACGAAAGTTGAGCTACAGAGACCAGGGCCATTTTATTTCATCAGTGGGGCAAAGGGCCATTGCGAGCAGGGCCAGAAGCTGATCGTTGTGGTTGTGACTCCTCGCCGCAGGTTCATCGGCATCTCTCCGGCGCCTTCTCCCTCGGAGAGTGAGGGTCCGGCGGTTGCTCCGTCCAGTGGAGCTGCAAATTTGAAGGTTGGACTTTTGGCGGTGATCGTCGGAATTTTGGGTGTTGGAGTTGGTTTGTTGTGA 531 51.6 MAGFSRALFLLTFLLFSFSEAREILVGGKSDAWKIPSSQSQSLNQWAEASRFRIGDTLVWNYEEGKDSVLKVRKEDYEACNTENPEQRFEDGNTKVELQRPGPFYFISGAKGHCEQGQKLIVVVVTPRRRFIGISPAPSPSESEGPAVAPSSGAANLKVGLLAVIVGILGVGVGLL 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27154321 27154930 + CcPI632755_08g015490.1 Cco08g1549 186023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1549 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055(InterPro)
Cco08g1549 176 CDD OsENODL1_like 22 124 IPR041846 -
Cco08g1549 176 PANTHER BLUE COPPER PROTEIN 16 136 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco08g1549 176 Pfam Plastocyanin-like domain 33 118 IPR003245 GO:0009055(InterPro)
Cco08g1549 176 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cco08g1549 176 FunFam Early nodulin-like protein 1 21 129 - -
Cco08g1549 176 Gene3D - 20 128 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0184 Cco-Chr3:1875677 Cco08g1549 Cco-Chr8:27154321 1.20E-06 dispersed
Cco08g1549 Cco-Chr8:27154321 Cco10g0526 Cco-Chr10:6272223 5.60E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1549 - - - 0.0