Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1550 ATGGACAATGGATCTCTCCGTGAAGCTCCAAGAATGGGGAAAGAACCAAATTCCGATCCACCCAACAACAACAGCAAACTCATCTCGATCATGTCACAGCCATTCCGGTGGCTTAAAATGCTCTCATCAGAGCTAAATCCGAGTTTCATCGCCGGTGTGATCCTCGTCTACGGCTTAAGCCACGGCTTCTCCAGCTCCTATTTCAAAGTCGTCTCGGATTACTATTGGAAAGACGTGCAGAAGCTACAGCCGTCGGTAGTTCAGATCTACATCGGGATTTACGCGATTCCATGGGTGATGAAGCCGATTTGGGGGCTATTGACGGACGCGTTTCCAGTGAGAGGTTACTTGCGGCGGCCGTATTTCGTGATAGCGGGAGTGGTGGGAGCGACGTCGGCGGTGGCGGTGGCGGTGAAAGGGGGATTGGGGGTTTTGGAAGCATTAGGGCTTTTGATTGGGATTTCAGGGGCGATGGCGATTGCGGATGTGACGATTGATGCTTGCATTGTGAGAAATAGCATTGAAGTTCAGTGGTTAGCGCAAGATTTGCAAAGCCTTTGTGGAGCTTGTTCTTCGATTGGGCATTTGATTGGATACTCCACCAGTGGCGTTTTTGTTCATCTTCTCGGCGCTCAGGAGGCACTTGGAATATTGGCAATTCCTCCGGCCATGATAATATTGTTGGGCTTCTTCATGCATGAGACACCATCCACCACCCTCCAATATAATGGGAAGTCCAAGGCAGGATCTATAAAGCAAGTGGGAGTGGCCATAAGAGACACGTGCAAAGCCATCAAATATCCGCACGTGTGGAAGCCTTCCCTTTTCATGTTCCTTTGTCTTTCTCTCAGCATAAGTACTCACGAGGGGCAGTTCTATTGGTACACAGACAAGAAAGCCGGTCCCGCCTTCTCTCAGGAATCGGTAGGGCTCATTTATGCAATCGGCTCAGCGGCGTCACTAATCGGAGTACTAATTTACCACAAAACCCTCCGAGACTTAAAATTCCGACGAATCCTCTTCTTCGCTCAAATCTTCTACGGCGTCGCCGGATTTCTCGACGTCATCTTCGTCCTGCGGTGGAATTTAGCCCTAAAAATCCCGGATCAGTTATTCGTGGTATTGGAAGAGTGCGTTACTCGAATCGTGGCGCGAATCCGGTGGACGCCGATGATGGTTCTGAACACTCGACTCTGTTCCGTGGGGATCGAAGGGACACTCTTCGCATTATTGGCTTGTATTGATAGCCTGGGGACGCTGTGCTCGAAATGGAGCGGCGGATTGGTTCTACATGCGTTTGGAGTAACGAGGAGCGATTTTAGGAACTTGTGGTTGGTGGTTCTGCTTCGGACTGTGTTGAGATTTGTGGTTGTGGCGTTCGTTTTTCTCGTTCCTGATGCGAGTCAATCGGATATTTTGGTTCCATCTGATCAGACGATGATTAGTAAGATTTCTTGTTCGACGACTGTGAAGGAAGATGGCGATTGCATTCCTCTTGTCTCCATGAAAGGCGAGGGGCGAGGTTAG 1527 49.71 MDNGSLREAPRMGKEPNSDPPNNNSKLISIMSQPFRWLKMLSSELNPSFIAGVILVYGLSHGFSSSYFKVVSDYYWKDVQKLQPSVVQIYIGIYAIPWVMKPIWGLLTDAFPVRGYLRRPYFVIAGVVGATSAVAVAVKGGLGVLEALGLLIGISGAMAIADVTIDACIVRNSIEVQWLAQDLQSLCGACSSIGHLIGYSTSGVFVHLLGAQEALGILAIPPAMIILLGFFMHETPSTTLQYNGKSKAGSIKQVGVAIRDTCKAIKYPHVWKPSLFMFLCLSLSISTHEGQFYWYTDKKAGPAFSQESVGLIYAIGSAASLIGVLIYHKTLRDLKFRRILFFAQIFYGVAGFLDVIFVLRWNLALKIPDQLFVVLEECVTRIVARIRWTPMMVLNTRLCSVGIEGTLFALLACIDSLGTLCSKWSGGLVLHAFGVTRSDFRNLWLVVLLRTVLRFVVVAFVFLVPDASQSDILVPSDQTMISKISCSTTVKEDGDCIPLVSMKGEGRG 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27156187 27161077 + CcPI632755_08g015500.1 Cco08g1550 186024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1550 508 Pfam BT1 family 62 472 IPR039309 -
Cco08g1550 508 CDD MFS_FBT 52 451 - -
Cco08g1550 508 Gene3D MFS general substrate transporter like domains 48 466 IPR036259 -
Cco08g1550 508 SUPERFAMILY MFS general substrate transporter 52 462 IPR036259 -
Cco08g1550 508 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 37 471 IPR039309 -
Cco08g1550 508 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1550 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0592 Cco-Chr5:4826448 Cco08g1550 Cco-Chr8:27156187 2.70E-40 dispersed
Cco06g0638 Cco-Chr6:7067664 Cco08g1550 Cco-Chr8:27156187 5.80E-41 dispersed
Cco08g1550 Cco-Chr8:27156187 Cco08g1553 Cco-Chr8:27189609 1.10E-110 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g592 . . . . . . . . Cmo05g00350 . . Cma05g00346 . . Sed11g1138 . . Bhi04g00055 Tan02g2767 Cmetu03g2109 . Hepe10g0213 . Lcy13g1837 . . . . . . . . . Cone17ag0975 Cone20ag0317 . . . Cme03g01573 . . . . . . . . . . . . . . Car05g00292 Cpe11g00291 . . . . . . . . Cla08g01370 Cam08g1839 . Cco08g1550 Clacu08g1534 . Cre08g1317 Lsi08g01252 . Chy03g01080 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012952 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 28