Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1552 ATGGGAATATGTAGAACCTTGATTGTTCTTCTTCACAGTCTAGCTATTTCATGGGCATGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAGTCTGACAAGAAGGAGCTGGAAAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGCTGAGGGAAAGACGAAATCAAGATCGTGAACATTGGCGTGACGGGCGCCATGGAGAAATCTCAACACCATCTAGTCGATTTGATGAACTGCCTGATGACTTTGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCCCAAACGACTAACCTTTATGTTGGAAATTTATCTCCACAGGTTGATGAGAATTTTCTCCTTCGAACTTTCGGGAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAACGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTACGGGTATGAGCTGAAAATTGGATGGGGAAAGTCTGTTGCTCTTCCATCCCAAGCATTACCTGCACCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGTTCATCAGGACCGCCAGTCACCTCTGTCCCAAATCAAAATTCTGAACTGGTTCTGACACCCAACATTCCTGATATTACTGTTGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATCATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACGGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAGAAGGAGTCTGGTCCCACTTATGCTGCTGGAAGAAGCAGACGCGTGGAGCTTGAAAGAACATTAACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGCACGAAATTTGAAGCAACATTACCTGACATCATTGAGAGCTTCAATGATCTATATCGCAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTATTAAAACTATTGCAAGTATGGTCCGATTGGTTTCTGTTTTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGCTTGGGAAACTCTGGTGTGATCCCTTTTCATTCGTTATGTGGTGATGCCCCTGAGATTGAACGGAAGGCCAATTGTGATGATTTAGGAGATGGGAGTAAAATCAATCAAGATGCTGAATTGGCAATGGGAAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAGCTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGTTGAACGAGATCCAGCAGAAATTTCTGGTTGGAACCGTTTTGGGGATGACGAGCCAGATTTCCAAAGGATGGGTTCTGTGCCTATGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCAAAAAGTCTGGGAAAAATTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGCGACAATGAGCAAAAAGGAGGTAGTAGGGGTCTCGGTTTAAGTTATTCATCTTCTGGAAGTGAAAATGCAGGTGATGGTCCTAGTAAAGCTGATGAGATGGAGATTACTACGGAGGCAAGTGTCCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGTGTAGAGGTGGCTTTGATTGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGCAGAGGAAATAGAGAGGAGAGTTTTGATATATCGGAAACAACTAGAATCTGAATATGGACTGTCAGATTCCAATGAGACTGCTTCAAGGAAGA 2470 43.6 MGICRTLIVLLHSLAISWACEKSKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQDREHWRDGRHGEISTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANCDDLGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSHSGRYSSSSRETKVERDPAEISGWNRFGDDEPDFQRMGSVPMAQTLSIPQPELKGFKKSGKNLPASKWAREDDESDNEQKGGSRGLGLSYSSSGSENAGDGPSKADEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSAEEIERRVLIYRKQLESEYGLSDSNETASRK 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27170962 27186376 + CcPI632755_08g015520.1 Cco08g1552 186026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1552 823 Gene3D Surp module 270 339 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco08g1552 823 CDD cwf21_RRC1-like 763 812 IPR047491 -
Cco08g1552 823 Pfam CID domain 399 527 IPR006569 -
Cco08g1552 823 Pfam Surp module 282 334 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco08g1552 823 PANTHER RNA PROCESSING PROTEIN LD23810P 31 805 IPR051485 GO:0003723(PANTHER)|GO:0005634(PANTHER)
Cco08g1552 823 Pfam cwf21 domain 764 810 IPR013170 -
Cco08g1552 823 MobiDBLite consensus disorder prediction 25 122 - -
Cco08g1552 823 MobiDBLite consensus disorder prediction 48 118 - -
Cco08g1552 823 Pfam RNA recognition motif 137 210 IPR000504 GO:0003723(InterPro)
Cco08g1552 823 SUPERFAMILY RNA-binding domain, RBD 128 226 IPR035979 GO:0003676(InterPro)
Cco08g1552 823 MobiDBLite consensus disorder prediction 721 738 - -
Cco08g1552 823 SMART surpneu2 282 336 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco08g1552 823 MobiDBLite consensus disorder prediction 647 672 - -
Cco08g1552 823 SMART 558neu5 399 534 IPR006569 -
Cco08g1552 823 MobiDBLite consensus disorder prediction 633 769 - -
Cco08g1552 823 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 216 IPR000504 GO:0003723(InterPro)
Cco08g1552 823 CDD RRM_SR140 134 217 IPR035009 -
Cco08g1552 823 MobiDBLite consensus disorder prediction 703 719 - -
Cco08g1552 823 Coils Coil 397 417 - -
Cco08g1552 823 SUPERFAMILY ENTH/VHS domain 394 533 IPR008942 -
Cco08g1552 823 MobiDBLite consensus disorder prediction 360 381 - -
Cco08g1552 823 ProSiteProfiles SURP motif repeat profile. 284 327 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco08g1552 823 SMART cwf21_2 763 812 IPR013170 -
Cco08g1552 823 Coils Coil 764 784 - -
Cco08g1552 823 ProSiteProfiles CID domain profile. 392 537 IPR006569 -
Cco08g1552 823 Gene3D - 46 218 IPR012677 -
Cco08g1552 823 Gene3D - 763 814 - -
Cco08g1552 823 SMART rrm1_1 136 212 IPR000504 GO:0003723(InterPro)
Cco08g1552 823 SUPERFAMILY Surp module (SWAP domain) 258 339 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco08g1552 823 Gene3D - 393 537 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1552 K12842 - - csv:101209274 1504.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40