Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1564 ATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAGCTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGATGTCGACGGTGATGCTGCTGATGTTAGTAGAGAAGAAGCGGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAATCGTTCCCGTACGGTTACCATCCTCAGTCAATCAGTCACAGTGTATCGTCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACGAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGCGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1014 53.35 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDSSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYHPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRASGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27253434 27254565 - CcPI632755_08g015640.1 Cco08g1564 186038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1564 337 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cco08g1564 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 324 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cco08g1564 337 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cco08g1564 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515(InterPro)
Cco08g1564 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 Pfam CCT motif 276 318 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0764 Cco-Chr6:8753251 Cco08g1564 Cco-Chr8:27253434 5.20E-07 dispersed
Cco07g1610 Cco-Chr7:30140126 Cco08g1564 Cco-Chr8:27253434 8.10E-07 dispersed
Cco07g1699 Cco-Chr7:31002298 Cco08g1564 Cco-Chr8:27253434 4.10E-29 dispersed
Cco08g1564 Cco-Chr8:27253434 Cco11g1273 Cco-Chr11:25229191 9.60E-44 dispersed
Cco08g1564 Cco-Chr8:27253434 Cco06g1497 Cco-Chr6:25489231 5.60E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59825 PF00643 zf-B_box 3.60E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1564 - - - 0.0