Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1564 ATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAGCTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGATGTCGACGGTGATGCTGCTGATGTTAGTAGAGAAGAAGCGGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAATCGTTCCCGTACGGTTACCATCCTCAGTCAATCAGTCACAGTGTATCGTCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACGAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGCGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1014 53.35 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDSSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYHPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRASGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27253434 27254565 - CcPI632755_08g015640.1 Cco08g1564 186038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1564 337 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cco08g1564 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 324 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cco08g1564 337 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cco08g1564 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515(InterPro)
Cco08g1564 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cco08g1564 337 Pfam CCT motif 276 318 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1564 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0764 Cco-Chr6:8753251 Cco08g1564 Cco-Chr8:27253434 5.20E-07 dispersed
Cco07g1610 Cco-Chr7:30140126 Cco08g1564 Cco-Chr8:27253434 8.10E-07 dispersed
Cco07g1699 Cco-Chr7:31002298 Cco08g1564 Cco-Chr8:27253434 4.10E-29 dispersed
Cco08g1564 Cco-Chr8:27253434 Cco11g1273 Cco-Chr11:25229191 9.60E-44 dispersed
Cco08g1564 Cco-Chr8:27253434 Cco06g1497 Cco-Chr6:25489231 5.60E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1564 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 1.8e-83 306.6
Cco06g1497 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.4 8.8e-59 224.6
Cco06g1497 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 1.7e-67 253.4
Cco08g1564 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 8.3e-54 208.0
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 5.8e-90 328.2
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 2.9e-89 325.9
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g0508 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 3.6e-51 199.1
Cco11g0413 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 53.2 1.4e-42 170.6
Cco07g1085 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 4.1e-76 282.0
Cco07g0890 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.6e-56 213.4
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cco07g0890 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.2e-48 189.9
Cco02g0508 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 3.0e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59825 PF00643 zf-B_box 3.60E-06 No_clan Cco TF