Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1567 ATGAGTTCGACCCTTTCGCGGTTGATCCATTCGAGATCATCGATTCCCAAGTTATACACAATGGCTGCTTCTCGGGGTGGGAGACCATTTTCAACAGATTCTAATAAGATCGACGAACCGTTCAAGGTTGAGGAAGCTGAAACAGTTAATGTTCCCCCACCTCCAACTGAGAAGTTGCTGGTGCTGGGTGGGAATGGATTTGTGGGCTCTCATATCTGTCAAGAAGCTCTAAATCGTGGCCTTACAGTTGCTAGTCTTAGTAGGTCGGGTAGATCATCAATACGTGGTTCTTGGGCTAACAATGTAATTTGGCATCGAGGGAACCTTCTTTCACCCGATTCCTTGAATGAAGCTTTTGACGGTGTTACAGCTGTTATCTCTTGCATTGGTGGTTTTGGCTCTAATTCTCAAATGTACAAGATCAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTTCAGATAAAGGTGTGAAGAGATTTGTCTATATCTCTGCTGCTGATTTTGGCTTGGCTAATTACTTGCTACAGGGATATTATGAGGGAAAGCGAGCCGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGAGTGATTTTGAGGCCGGGATTTATTTATGGGACCCGGAAAGTTGGGAGCGTTAAGTTACCTCTGGGAGTAATTGGTTCTCCTCTGGAAATGGTTCTTCAACACGCCAAACCACTACACCAATTACCACTCGTTGGTCCTCTATTTACTCCTCCAGTAAGTGTGACGTCGGTGGCGAGGGTTTCTGTTCGGGCAGCAACAGATCCTGTCTTTCCTCCCGGCATCATTGATATCTATGGCATACAAGGATACAGTCAACACAAGTCGAAATAG 864 45.25 MSSTLSRLIHSRSSIPKLYTMAASRGGRPFSTDSNKIDEPFKVEEAETVNVPPPPTEKLLVLGGNGFVGSHICQEALNRGLTVASLSRSGRSSIRGSWANNVIWHRGNLLSPDSLNEAFDGVTAVISCIGGFGSNSQMYKINGTANINAIRVASDKGVKRFVYISAADFGLANYLLQGYYEGKRAAETELLTKFPYGGVILRPGFIYGTRKVGSVKLPLGVIGSPLEMVLQHAKPLHQLPLVGPLFTPPVSVTSVARVSVRAATDPVFPPGIIDIYGIQGYSQHKSK 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27280573 27284927 + CcPI632755_08g015670.1 Cco08g1567 186041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1567 287 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED 43 283 IPR051207 GO:0005739(PANTHER)|GO:0044877(PANTHER)|GO:1901006(PANTHER)
Cco08g1567 287 Pfam NAD(P)H-binding 63 207 IPR016040 -
Cco08g1567 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 58 277 IPR036291 -
Cco08g1567 287 Gene3D - 50 275 - -
Cco08g1567 287 FunFam Uncharacterized protein, chloroplastic 52 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1567 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1567 Cco-Chr8:27280573 Cco09g1171 Cco-Chr9:11378901 3.70E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g630 . . . . . . . . Cmo05g00338 . . Cma05g00336 . . . . . Bhi04g00078 Tan02g2789 . . . . Lcy13g1851 . . . . . . . . . Cone17ag0963 Cone20ag0304 . . . Cme03g01554 . . . . . . . . . . . . . . Car05g00280 Cpe11g00281 . . . . . . . . Cla08g01384 Cam08g1855 Cec08g1434 Cco08g1567 Clacu08g1551 . Cre08g1334 Lsi08g01268 . Chy03g01065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007661 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 2 2 1 35