Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1583 ATGAACGGTCATGATGCGGAGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGCTAACGGAACGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAAGAAGGATAAGGATGATCATCAGCACCACCGGAAGATTATTACTAGTGATCCTTACGTCACTGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTGTCTGGAATGAGCACTTCAAAATCCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTCAAGGATAACGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAACCATAGATGATTGGTTTCCGATTATCGGTTCGTTCGGGAAACCGCCGAAGCCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGACAATCCTCTGTATCGTTATGGCATTGCGGCCGATCCCGAACATTTTGGCGTTCGGAATTGTTATTTTCCGGTACGGCATGGAGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGATTCCATGTTGGAGAAGATTGAATTGGAAATTGGGAATGTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTGGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGAATTTGAACCTGGGAGAGTTGCTCAAGTACAAGTCACAGGAAGGTGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAATTCTTCATTAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTATCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACGCTTTTCACCCATCACCAGAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTTCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGAGGATGATTATCACAATCCAACTTTTTCTGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCGGCATATGATGTGCTCACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGGTTCAAAAGAGTATCGCATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCAGTCCCCAACGATGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGGCAATTGGCATGTTCAGGTTTTCCGGTCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCATCATTTGCGTGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAATTGGCGTTGAAGATTGCTAGTAAGATAAGAGCGAATGAGAGGTTTGCTGTCTACGTTGTGATACCAATGTGGCCTGAAGGGGTTCCCACTTCTGTTTCTGTGCAAGAAATCCTATTTTGGCAGGGTCAGACAATCCAAATGATGTATGAAGTCATTGGAAGAGAGTTGAAATATAAGAATCTTGAGAACGCTCATCCCTCAGACTACCTGAACTTTTTCTGTCTTGGAAATAGGGAACCGCACGAGGACTTGACATGTTCCTCTGGTCATTCTTCCAAGAGCGAAGATGTGGTTCCAGACTCACAAAAGTTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTATGTAATAATAGGGTCTGCAAATATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGCGCATATCAACCCAGTTACACATGGGGTAAGAAGAAACGACATCCACAAGGCCAGGTTTATGGCTATAGAATGTCGCTCTGGGCTGAACATTTGGGAAACATTGACGATTGCTTCAAGGAGCCTGAAAGTTTGACTTGTGTGAAGGCAGTCAACAAGATAGCTGAAGATAACTGGAAGAAATACACCGCAACGGAATTTGTGCCGTTGCAAGGGCACCTCCTTAAGTACCCGATCGAGGTCAGCCAAAGTGGGAAGATAGGTCCATTGACTGGACACGAGACTTTCCCTGACTTTGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 2544 44.58 MNGHDAEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKKKDKDDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPVWNEHFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDSMLEKIELEIGNVYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKISSFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDYHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGVPTSVSVQEILFWQGQTIQMMYEVIGRELKYKNLENAHPSDYLNFFCLGNREPHEDLTCSSGHSSKSEDVVPDSQKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGSRDTEIAMGAYQPSYTWGKKKRHPQGQVYGYRMSLWAEHLGNIDDCFKEPESLTCVKAVNKIAEDNWKKYTATEFVPLQGHLLKYPIEVSQSGKIGPLTGHETFPDFGGKVLGARSNLPDALTT 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27393193 27398485 - CcPI632755_08g015830.1 Cco08g1583 186057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1583 847 Pfam Phospholipase D C terminal 767 837 IPR024632 -
Cco08g1583 847 SUPERFAMILY Phospholipase D/nuclease 231 456 - -
Cco08g1583 847 PANTHER PHOSPHOLIPASE D 11 835 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco08g1583 847 Pfam C2 domain 15 146 IPR000008 -
Cco08g1583 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824(InterPro)
Cco08g1583 847 SMART C2_3c 15 144 IPR000008 -
Cco08g1583 847 FunFam Phospholipase D delta 222 465 - -
Cco08g1583 847 Pfam Phospholipase D Active site motif 695 720 IPR001736 GO:0003824(InterPro)
Cco08g1583 847 SMART pld_4 350 385 IPR001736 GO:0003824(InterPro)
Cco08g1583 847 SMART pld_4 693 720 IPR001736 GO:0003824(InterPro)
Cco08g1583 847 Gene3D Endonuclease Chain A 216 468 - -
Cco08g1583 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 169 IPR035892 -
Cco08g1583 847 CDD C2_plant_PLD 10 168 - -
Cco08g1583 847 SUPERFAMILY Phospholipase D/nuclease 539 778 - -
Cco08g1583 847 PIRSF PLD_plant 1 847 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cco08g1583 847 Gene3D Endonuclease Chain A 521 739 - -
Cco08g1583 847 Gene3D C2 domain 12 175 IPR035892 -
Cco08g1583 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824(InterPro)
Cco08g1583 847 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0491 Cco-Chr6:5394628 Cco08g1583 Cco-Chr8:27393193 9.60E-40 dispersed
Cco08g1502 Cco-Chr8:26761848 Cco08g1583 Cco-Chr8:27393193 8.30E-200 dispersed
Cco08g1583 Cco-Chr8:27393193 Cco09g0271 Cco-Chr9:2413920 8.00E-196 dispersed
Cco06g0019 Cco-Chr6:197392 Cco08g1583 Cco-Chr8:27393193 1.70E-270 transposed
Cco10g0347 Cco-Chr10:4019268 Cco08g1583 Cco-Chr8:27393193 3.90E-251 transposed
Cco04g1834 Cco-Chr4:33162808 Cco08g1583 Cco-Chr8:27393193 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1583 K01115 - csv:101213442 1676.76