Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1585 ATGGAAGAAATTTGGAAGCTAAGCCATTTGCTGGTCACAGTATTTTTATACACTTTTGCAACCATGATGATCATTCCAGCCATTACAGATGTGACCATGTCGGCTCTTTGTCCTGGTCAAGACGAGTGTTCTCTCGCTATTTACTTCACTGGCTTTCAACAAATCGTGACGGGAGTTGGGACGTTGCTAATGATGCCATTAGTGGGAAACTTGTCGGACAAGTATGGAAGAAAGACTATGCTCACCATTCCTATGATTCTCACCGTAGTTCCCCTGGGGATATTAGGGTATGGGAGATCGAGGGATTTGTTCTACGTTTATTTTGTGTTAAAGTGTGTGACGAGTACGGTTTGTGAAGGGAGCGTTCAGTGTTTGGCCGTTGCTCATGCGGCTGACAATGTACCGGAGCACCGGAGAGCCTCTGCATTTGGACTGCTATCCGCCATTGGATCTTCTGCTTTCGTCTGCGGGACTCTCTGTGCTCGTTTTCTCTCCATTCCGTCCACTTTTCAGGTAGCGGCTTTCATGGCGGCTGTGGCGGCAATTTATATGAGGATTTTCCTTACTGATTCTGTCGCCGATTGCAATCTTTCTGCTCCCTTACTGTCTGGGGAGAATGTAGAATCTGTTTCTTCGGATACAGTTTCGCCCAAAAAAGAACAAATTATTTCGACCTTGCCTTCACTGAAGGACCTTTTTGCACTGTTGAAGACTAGCTTGACATTTTTACAAGCGGCCATTGTTGCATTTTTTTGCAATCTTGCTGATGTTGGCCTTCATGCTTCTATACTGTACTATTTAAAAGCCAGATTTCACTTTAACAAGGATAGGTTTGCTGATTTGATGGTGATTTCTGGGGCTGCTTCGACTGTTTCACAGCTACTTTTAATGCCCATCTTGGTTCCTGCTCTAGGAGAGCACAGGCTGCTCTCAGTTGGGCTCTTTTTCAACTGCATTCATATGCTTCTTTACAGCTTTGCTTGGGCTGACTGGGTTGCCTACGTTGCTGGAATGTTTTCCATCTGGTTTGTTTTCTGGCGGCCTTGTCTACAAAGCATTGTATCAAAGCAAGTTGGTGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAATGTTGTTTCTCCATTGGTATTCTCCCCTTTAACAGCTTTGTTTCTCTCTGAAAACGCTCCATTTTATTTCCCTGGATTTAGCATTATGTGCGCTGGATCTGCAGCGATGATAGCATTTGGTCAGAGTATGATGATTAGGGATCCTATCAAAGCCAGCAGTAGCAGCCATGTGGAAGTCTAG 1314 44.9 MEEIWKLSHLLVTVFLYTFATMMIIPAITDVTMSALCPGQDECSLAIYFTGFQQIVTGVGTLLMMPLVGNLSDKYGRKTMLTIPMILTVVPLGILGYGRSRDLFYVYFVLKCVTSTVCEGSVQCLAVAHAADNVPEHRRASAFGLLSAIGSSAFVCGTLCARFLSIPSTFQVAAFMAAVAAIYMRIFLTDSVADCNLSAPLLSGENVESVSSDTVSPKKEQIISTLPSLKDLFALLKTSLTFLQAAIVAFFCNLADVGLHASILYYLKARFHFNKDRFADLMVISGAASTVSQLLLMPILVPALGEHRLLSVGLFFNCIHMLLYSFAWADWVAYVAGMFSIWFVFWRPCLQSIVSKQVGASEQGKAQGCISGISSFANVVSPLVFSPLTALFLSENAPFYFPGFSIMCAGSAAMIAFGQSMMIRDPIKASSSSHVEV 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27419160 27427351 - CcPI632755_08g015850.1 Cco08g1585 186059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1585 437 CDD MFS_SLC46_TetA_like 10 422 - -
Cco08g1585 437 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857(InterPro)
Cco08g1585 437 Gene3D MFS general substrate transporter like domains 5 418 IPR036259 -
Cco08g1585 437 Pfam Major Facilitator Superfamily 10 191 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco08g1585 437 PRINTS Tetracycline resistance protein signature 366 389 IPR001958 GO:0022857(InterPro)
Cco08g1585 437 PRINTS Tetracycline resistance protein signature 306 327 IPR001958 GO:0022857(InterPro)
Cco08g1585 437 PRINTS Tetracycline resistance protein signature 56 72 IPR001958 GO:0022857(InterPro)
Cco08g1585 437 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 417 - -
Cco08g1585 437 SUPERFAMILY MFS general substrate transporter 10 416 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1585 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0427 Cco-Chr2:3851050 Cco08g1585 Cco-Chr8:27419160 2.70E-118 dispersed
Cco02g1210 Cco-Chr2:22532240 Cco08g1585 Cco-Chr8:27419160 7.90E-115 dispersed
Cco08g0961 Cco-Chr8:21477269 Cco08g1585 Cco-Chr8:27419160 2.20E-67 dispersed
Cco08g1584 Cco-Chr8:27404651 Cco08g1585 Cco-Chr8:27419160 3.00E-199 tandem
Cco08g1585 Cco-Chr8:27419160 Cco08g1586 Cco-Chr8:27429401 1.40E-204 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123