Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1590 ATGTCTTTACTCCACCTGACAAAACCTCCACCTCCTCCTTCTTCTTCACTGAAATTCAAGGTTCTTCAATGTTTGCTACTTCATTTGCTTCTCCAACCTGCTAGTGCTGCTATAAAGATTCCTCCTGGCTACTCGGTTCCTGCCGTTTTCGTCTTCGGCGATTCGATTGTTGATACCGGTAACAACAACGATCTCCTTACTCAAGCTAAGTGCAACTATCCGCCTTACGGTAAGGATTTCCCTGGCGGACGACCAACTGGCCGATTCTCCAACGGCAGGGTTCCCTCCGACCTTGTAGCTGATGCGTTAGGTATCAAAGCGTTGTTGCCACCGTATGCAAACCCAAATCTTCAACCCGAGGACCTAATCACCGGCGTCAACTTTGCTTCTGGTGGAGCTGGATTTGATCCTATAACCTCTAAGACGGCGCCAGCAATATCACTTGAGGCTCAATTAGCAATGTTTAGAGAATACAAAAAGAAGGTAGAAGGACTAGTAGGAGAAGAAAGAGCAAAATTCATAATAGACAATAGCCTTTATTTGGTGGTGGCCGGAAGCAATGACATTGCCAACACATTTTATCTTGCACGAATACGACAAGCTCAATACAACATTAATACTTATACGGATTTCATGGTCCAATATGCTTCGACTTTCGTCAAGGAATTGTACGCAGCCGGTGCACGGAGGATTGGGTTTTTCGGGACTCCACCACTCGGATGCGTACCGTCGCAGAGAACTTTGGCAGGAGGGATCGAAAGGGCATGTGTGAATGAGTATAACAAGGCTTCAGAGCTTTTCAATGGAAAGTTGCATTCCACTTTGGATTACCTTCAAACTGTATTGCCTGATAGTAGAGTGGTTTACGTGGACATTTACAACCCTTTACTTGATGTCATCCAAAACTATGTTAAATATGGATTTGAAGTAGCAGATAGAGGGTGTTGTGGAAGTGGGACAATTGAGAGCTTCAACTCGCTTGGTGAAATCGAATTCAATTGTTTGAAGATCGCAAAGGAAACCCTAGAAATTCACTTCTCGTCGGTCCAAGCAACTGGTCGTCAGGTTCCCCCAATCATGGAGCCTGTTGCCTTTGTTGTCGACAAATTGAAAGGTTTCGGGACCGCAACCCAGAATTTCTTTGATGGCTTAGTTCATCGCCGCGAAAAATCATCTCGCCGCAGACCGATTGAAATCCTGAAGCGGCTACAAAGGGAAGCATTTTCAGATTTAATGAGACTTAGGGACAGACAAGACAAGGTAGAGAAGGTACTATCCTTTTATAGTACACAAAGGAGTAGCCCATTCCAAGAAAATGCCACCCATGTAAAAGGAGAGGTTAATATATTGGGCGCATTGCTATTGATGAGTGTTATTGATAATCATAGCTTCAATGCACTTCGTAGAGCAGGAATCTCGACAGGAATTCACTCAAGATTGACTTTTGAAACAACTGTAAGAGAGAGCGATTATCTTGTTGCAGAGTTTGTAGCTAATCAGAAGGCCGAGGTGGATTTTGGCGTTGATTCTGGAAGTGAACTTACTTTATCTAAAGTTTTTTACAAGGCTAGTATGAGAGATTGGATATCTGCAATTGTAGTTCCTGTTGGAGCTCGATGTAGGGATATTGCTGTTATTGCAAATCCTTCTCATCAGGAGAAGGGTCTTACTGATACTTCATCTTTTAGGCCACCCCTTTTGGATCAGGCTAATGGTGGTGCCATTGGTTTAACAGTGAGAAAATCTAATATCACGGCTTCCTTAGCTCAATTTATTTCTACAGAGAGAATTCAACCAAGTTTTGATCGGATTCAGCATTACTTTGGTACTTTTGGGCAACTGGTGTATCAACTTCCAAGAGCAACAAAATTATCGGTTCTGGGTCTTCTCCAAGCAACAAAATTATCTAATCAACATGTCAATCTTGGAGCTCTTACAATTCCAGTGTGTCTTCGTAGTCATAGATCTTCTGAAACAGTAGAGGCATCTGATCCACGTTTGTTAACAGTTCCAGGGGAAGCTATTTCAAGGGGATCCATTGCCTTAATGCTGGAGTCGGAACTTGATGAAGTAACCAGAATTGGAGGTTGGATTGAGCTGAGCCAATCAAATTCCAAACCTTTGCAATGGGCTGTGTCAGTATCTGATAATAATAGTGAAGATGCCTTAGGTTGGGGAATGAGTTTAAGTGGGATTTTTGGAGGCCCATTAGATGGGGATCAGTTTCAGGTTGAATCTTATGTTAAACTGAATCTGAGTAAGAGATTCAGCTTAAAGCCAGGACTTGCATATGTCACAGACGGCAATGCCAAAATGATGGCCTTTCTGACTCAAGTGCTGCTTCCAGAATCTTCTTTGCTAGTAAGGAAAGCTTCTTCTCCTTGTTACCATCATATTCAATTTGATGAATGTCATCAACGATTATTGTAG 2430 42.72 MSLLHLTKPPPPPSSSLKFKVLQCLLLHLLLQPASAAIKIPPGYSVPAVFVFGDSIVDTGNNNDLLTQAKCNYPPYGKDFPGGRPTGRFSNGRVPSDLVADALGIKALLPPYANPNLQPEDLITGVNFASGGAGFDPITSKTAPAISLEAQLAMFREYKKKVEGLVGEERAKFIIDNSLYLVVAGSNDIANTFYLARIRQAQYNINTYTDFMVQYASTFVKELYAAGARRIGFFGTPPLGCVPSQRTLAGGIERACVNEYNKASELFNGKLHSTLDYLQTVLPDSRVVYVDIYNPLLDVIQNYVKYGFEVADRGCCGSGTIESFNSLGEIEFNCLKIAKETLEIHFSSVQATGRQVPPIMEPVAFVVDKLKGFGTATQNFFDGLVHRREKSSRRRPIEILKRLQREAFSDLMRLRDRQDKVEKVLSFYSTQRSSPFQENATHVKGEVNILGALLLMSVIDNHSFNALRRAGISTGIHSRLTFETTVRESDYLVAEFVANQKAEVDFGVDSGSELTLSKVFYKASMRDWISAIVVPVGARCRDIAVIANPSHQEKGLTDTSSFRPPLLDQANGGAIGLTVRKSNITASLAQFISTERIQPSFDRIQHYFGTFGQLVYQLPRATKLSVLGLLQATKLSNQHVNLGALTIPVCLRSHRSSETVEASDPRLLTVPGEAISRGSIALMLESELDEVTRIGGWIELSQSNSKPLQWAVSVSDNNSEDALGWGMSLSGIFGGPLDGDQFQVESYVKLNLSKRFSLKPGLAYVTDGNAKMMAFLTQVLLPESSLLVRKASSPCYHHIQFDECHQRLL 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27469172 27480217 + CcPI632755_08g015900.1 Cco08g1590 186064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1590 809 FunFam GDSL esterase/lipase APG 38 342 - -
Cco08g1590 809 PANTHER GDSL ESTERASE/LIPASE 354 776 - -
Cco08g1590 809 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 49 60 IPR008265 GO:0006629(InterPro)|GO:0016298(InterPro)
Cco08g1590 809 SUPERFAMILY SGNH hydrolase 48 301 - -
Cco08g1590 809 CDD SGNH_plant_lipase_like 47 325 IPR035669 -
Cco08g1590 809 Gene3D SGNH hydrolase 43 339 IPR036514 -
Cco08g1590 809 Pfam GDSL-like Lipase/Acylhydrolase 49 320 IPR001087 GO:0016788(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1590 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1590 Cco-Chr8:27469172 Cco09g2287 Cco-Chr9:37091747 1.80E-64 dispersed
Cco04g1817 Cco-Chr4:33035719 Cco08g1590 Cco-Chr8:27469172 9.00E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1159 . . . . . . . . . . . . . . . . Cpe07g00344 . . . . . . . Cla08g01400 Cam08g1880 Cec08g1457 Cco08g1590 Clacu08g1572 . Cre08g1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005525 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 40