Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1594 ATGTCTAATAATCTCATCTTCACCTTTCTTCTCTTTTTTTCCTCCCTTCTCCCCTCTTTCAATGCCTTGAGCCACCGTTACTATGACCACACATGCCCTAATCTTGAGTCCATTGTTGCCGGAGAAGTCCACTTAGCCACTGCCAACGATAAGACCGTCCCTGCTGCATTGCTTCGAATGCACTTCCATGATTGTTTCATCAGAGGTTGTGATGGCTCTGTGCTTCTCGACTCCAAGGGGAAGAACACAGCTGAAAAAGATGGCCCTCCCAACATATCCCTCCATGCTTTTTATGTCATTGACAATGCCAAGAAAGCCATTGAATCTACCTGCCCTGGCGTCGTTTCTTGCGCTGATATCTTAGCCCTTGCTGCTCGAGATGCCGTCGTTTTGTCTGGAGGTCCTCATTGGGAGGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCTATTGAAACTAGACAATTACCAGCTCCCACATTCAACTTCTCTCAGCTCCAACAAAGCTTCTCCCAAAGGGGCCTTTCTTTACAAGATCTTGTTGCTCTTTCAGGCGGCCACACTCTTGGATTCGCTCATTGCTCGTCGTTCCAAAACCGAATCCACAACTTCAACTCGAGCCTCGACGTCGACCCGTCATTGCAGCCGGCATTTGCAGCCAGCCTCCGGAGCATATGTCCGGCGAGAAACAAGGTGAAAAATGCGGGTTCGGCCATGGATTCAACTTCCACAGTATTTGACAATGTATACTTCAAGCTTCTTCTACAAGGGCGGGGCATTTTTTCATCAGATCAATCTTTGCTTTCAAATCCCAAAACAAAAGCTTTGGTTTCAAGATTTGCGAATGAACAACATCTCTTTGAGAAGGCTTTTGTGAAGTCAATGGTGAAGATGGGTCAGATCGCCGGCGCCGGCCAAGAAGTCCGGCTAAACTGCAGGGTGGTCAGATGA 954 47.48 MSNNLIFTFLLFFSSLLPSFNALSHRYYDHTCPNLESIVAGEVHLATANDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESTCPGVVSCADILALAARDAVVLSGGPHWEVPKGRKDGRISKAIETRQLPAPTFNFSQLQQSFSQRGLSLQDLVALSGGHTLGFAHCSSFQNRIHNFNSSLDVDPSLQPAFAASLRSICPARNKVKNAGSAMDSTSTVFDNVYFKLLLQGRGIFSSDQSLLSNPKTKALVSRFANEQHLFEKAFVKSMVKMGQIAGAGQEVRLNCRVVR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27503485 27504767 - CcPI632755_08g015940.1 Cco08g1594 186068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1594 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cco08g1594 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 CDD secretory_peroxidase 23 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 Pfam Peroxidase 41 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 FunFam Peroxidase 158 299 - -
Cco08g1594 317 Gene3D - 26 316 - -
Cco08g1594 317 PANTHER PEROXIDASE 25-RELATED 24 313 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco08g1594 317 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1594 317 Gene3D Peroxidase, domain 2 158 299 - -
Cco08g1594 317 FunFam Peroxidase 26 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1824 Cco-Chr4:33083424 Cco08g1594 Cco-Chr8:27503485 7.80E-120 dispersed
Cco05g1836 Cco-Chr5:27336552 Cco08g1594 Cco-Chr8:27503485 1.40E-63 dispersed
Cco06g0563 Cco-Chr6:6085878 Cco08g1594 Cco-Chr8:27503485 6.90E-64 dispersed
Cco08g1594 Cco-Chr8:27503485 Cco09g0456 Cco-Chr9:4061489 2.00E-67 dispersed
Cco05g0930 Cco-Chr5:8135915 Cco08g1594 Cco-Chr8:27503485 4.70E-101 transposed
Cco04g1813 Cco-Chr4:33006412 Cco08g1594 Cco-Chr8:27503485 6.10E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1594 K00430 - csv:101214403 556.599