Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1595 ATGGAGAAACTTTGTTTCGCATTTGCTTTCTCTCTCACTCTCTCCAACTTTTTCTTCATTTCTGTCAATGCATTTACCGCGTCGGGATGGAACCCCGCCCATGCTACTTTCTATGGTGATAGCGATGCCTCAGGAACAATGGGTGGAGCTTGTGGGTATGGAAATTTGTACCAAACCGGTTACGGAACAAGGACGGCAGCGCTGAGCACGGCGTTGTTCAACGACGGTGCATCGTGCGGTCAGTGTTTCAAGATGGTGTGCGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACGGTGACGGCCACCAATTTTTGCCCACCAAACTACGCTCTCCCAAACAACAATGGCGGATGGTGTAACCCTCCGCTTAAACATTTCGACATGGCTCAGCCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTTCTCTACCAAAGGGTTCCTTGCGTAAAGAAAGGAGGTGTGAGATTCACAGTGAATGGAAGAGATTATTTTGAACTAGTTTTGATAAGCAATGTGGGAGGAGCTGGGGACATCAAATCAGTGTCCATTAAAGGGTCAAAATCCAACAATTGGAACCCAATGTCAAGGAATTGGGGGGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACAAGTGATGGCCAAACCCAAGTTTTCAACAATGTTGTACCTTCATCTTGGAGATTTGGCCAAACTTTTGCAAGCAAGGTCCAATTCAGTTGA 777 47.49 MEKLCFAFAFSLTLSNFFFISVNAFTASGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKMVCDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVGGAGDIKSVSIKGSKSNNWNPMSRNWGANWQSNSYLNGQSLSFKVTTSDGQTQVFNNVVPSSWRFGQTFASKVQFS 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27509100 27511480 - CcPI632755_08g015950.1 Cco08g1595 186069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1595 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cco08g1595 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cco08g1595 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cco08g1595 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cco08g1595 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cco08g1595 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cco08g1595 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cco08g1595 258 SUPERFAMILY Barwin-like endoglucanases 18 181 IPR036908 -
Cco08g1595 258 SMART dpbb_1 65 153 IPR007112 -
Cco08g1595 258 FunFam Expansin 163 257 - -
Cco08g1595 258 Pfam Lytic transglycolase 65 153 IPR009009 -
Cco08g1595 258 CDD DPBB_EXPA_N 29 158 - -
Cco08g1595 258 FunFam Expansin 20 159 - -
Cco08g1595 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Cco08g1595 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Cco08g1595 258 Gene3D - 19 158 IPR036908 -
Cco08g1595 258 Gene3D - 163 258 IPR036749 -
Cco08g1595 258 PANTHER EXPANSIN-A15 17 254 IPR002963 GO:0009664(InterPro)
Cco08g1595 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1595 Cco-Chr8:27509100 Cco11g0583 Cco-Chr11:6253081 4.60E-94 dispersed
Cco08g1595 Cco-Chr8:27509100 Cco05g2686 Cco-Chr5:34845054 4.40E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1595 - - - 0.0