Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1606 ATGGCGGCGGACGGATTTCAATTTCTATTGGGGCTCTTAAGTCTGCTGCTGTTGGTACCAGGTGGGTTTTCGACGAGCTTTACCTTTGTGAACAAATGTGGATTCACGGTTTGGCCGGGGGTTCTGTCGAACGGTGGCGTTCCACCGCTTCCCACTACTGGCTTCTCTCTTCAGACTGGAGAGTCCAAGACACTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTCTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGCTACTGGCGACTGTGGCTCTAATAAACTAGAGTGTGCTGGAAATGGAGCAACGCCACCGGCGACTCTCGCGGAGTTCACTCTCGACGGCTCCGGCGGGCTTGATTTCTTCGACGTTAGTCTGGTGGACGGTTACAATCTTCCGATGATTGTGGTGCCTCAGGGTGGTTCCGGCGACAACTGCACGAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGTCCATCAGAGCTGCGCGTGACGAGTGCCGACGGAAGAGAAGGCGTCGCGTGTAAAAGCGCGTGTGATGCCTTCAATCAACCGCAGTACTGTTGCACAGGCGCGTACCAAACACCGGACACTTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCTTACAGCTACGCGTACGATGATAAGACGAGTACTTTTACATGCGCCAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCATCGGAGGCACAGAATTCACCTGCGACGGCGAACCCATCTTCCGGCGGCGATGGTGCGATGGTGTACGAAGGTGCATCCCTGATTCAAACCGACTCAGCGCCCCCGCGCTTAGCCGGGATTTCAGCGGTCAGTGCGGTGGCGATTTGGTGGTTGTGGCAGCAGCTGTTCTTCTACTTCTGA 945 56.72 MAADGFQFLLGLLSLLLLVPGGFSTSFTFVNKCGFTVWPGVLSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSGGDGAMVYEGASLIQTDSAPPRLAGISAVSAVAIWWLWQQLFFYF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27606527 27607920 - CcPI632755_08g016060.1 Cco08g1606 186080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1606 314 Gene3D Thaumatin 25 247 IPR037176 -
Cco08g1606 314 MobiDBLite consensus disorder prediction 251 268 - -
Cco08g1606 314 SMART tha2 27 247 IPR001938 -
Cco08g1606 314 CDD TLP-PA 26 246 - -
Cco08g1606 314 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cco08g1606 314 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cco08g1606 314 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cco08g1606 314 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cco08g1606 314 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cco08g1606 314 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Cco08g1606 314 Pfam Thaumatin family 31 247 IPR001938 -
Cco08g1606 314 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cco08g1606 314 MobiDBLite consensus disorder prediction 251 270 - -
Cco08g1606 314 PANTHER OS03G0233200 PROTEIN 14 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1277 Cco-Chr2:24375783 Cco08g1606 Cco-Chr8:27606527 1.40E-99 dispersed
Cco05g2062 Cco-Chr5:29662647 Cco08g1606 Cco-Chr8:27606527 7.10E-126 dispersed
Cco05g2732 Cco-Chr5:35211865 Cco08g1606 Cco-Chr8:27606527 7.00E-78 dispersed
Cco08g1606 Cco-Chr8:27606527 Cco10g0076 Cco-Chr10:712712 8.00E-93 dispersed
Cco08g1605 Cco-Chr8:27588244 Cco08g1606 Cco-Chr8:27606527 9.00E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1606 - - - 0.0