Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1608 ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGCGATCCTTCCTCCGATCTTCAATTGGAGAGGATTAATGTCTATTACAACGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAACCGGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGTCAGTCCGGTGCCGGAAATAATTGGGCTAAAGGTCATTATACCGAAGGAGCCGAGTTGATCGATTCCGTTCTTGATGTTGTTCGTAAGGAAGCTGAGAATTGTGATTGCTTGCAAGGTTTCCAGGTTTGTCACTCCCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTCTTGATATCGAAGATTAGAGAGGAATATCCGGACAGGATGATGCTCACATTCTCGGTTTTCCCTTCTCCTAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTTCACCAATTGGTTGAGAATGCGGATGAATGTATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTAAAGCTCAGCACTCCTAGCTTTGGTGACCTGAACCATTTGATCTCCGCAACCATGAGTGGAGTAACATGTTGCTTGAGATTCCCAGGTCAACTGAACTCAGACTTGAGAAAATTGGCAGTGAATCTAATCCCATTTCCTCGTCTTCATTTTTTCATGGTTGGATTTGCACCTTTGACCTCCCGTGGCTCCCAACAGTACATCTCCCTCACCGTCCCAGAGCTGACTCAGCAAATGTGGGACGCCAAGAACATGATGTGCGCGGCCGACCCCCGCCACGGCCGCTACCTGACCGCCTCCGCCATGTTCAGAGGAAGAATGAGCACCAAAGAAGTAGACGAACAAATGATCAATGTACAAAACAAAAACTCGTCCTACTTCGTGGAATGGATCCCCAACAACGTGAAGTCAAGCGTTTGTGACATTCCTCCAAAGGGCTTGAAAATGGCTTCCACATTCGTGGGAAACTCGACCTCGATTCAGGAAATGTTTAGAAGAGTGAGTGAGCAGTTCACAGCCATGTTTAGGCGTAAAGCTTTTCTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTTACGGAAGCAGAGAGTAATATGAATGATTTGGTGGCTGAGTATCAGCAATATCAGGATGCTACTGTTGATGATGATGCTGATTTTGAGGATCGTGAAGAAGAGTATGCCGATCAGTAA 1347 47.07 MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDADFEDREEEYADQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27635433 27638834 + CcPI632755_08g016080.1 Cco08g1608 186082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1608 448 SUPERFAMILY Tubulin C-terminal domain-like 246 431 IPR008280 -
Cco08g1608 448 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 Gene3D Helix hairpin bin 376 432 IPR023123 -
Cco08g1608 448 PANTHER TUBULIN 1 427 IPR000217 GO:0000226(PANTHER)|GO:0000278(PANTHER)|GO:0005200(PANTHER)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005874(InterPro)|GO:0005874(PANTHER)|GO:0007017(InterPro)
Cco08g1608 448 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 245 IPR036525 -
Cco08g1608 448 SMART Tubulin_4 49 246 IPR003008 GO:0005525(InterPro)
Cco08g1608 448 SMART Tubulin_C_4 248 385 IPR018316 -
Cco08g1608 448 CDD beta_tubulin 2 428 - -
Cco08g1608 448 Coils Coil 410 430 - -
Cco08g1608 448 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cco08g1608 448 FunFam Tubulin beta chain 376 437 - -
Cco08g1608 448 Gene3D - 265 375 IPR037103 -
Cco08g1608 448 PRINTS Beta-tubulin signature 247 260 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 331 345 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 154 166 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 232 241 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 313 331 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 349 372 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 379 390 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 414 432 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 267 283 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Beta-tubulin signature 214 226 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 FunFam Tubulin beta chain 266 375 - -
Cco08g1608 448 FunFam Tubulin beta chain 1 264 - -
Cco08g1608 448 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 372 400 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Cco08g1608 448 Pfam Tubulin C-terminal domain 263 384 IPR018316 -
Cco08g1608 448 Gene3D Tubulin/FtsZ, GTPase domain 1 264 IPR036525 -
Cco08g1608 448 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1608 K07375 - - csv:101204817 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0840 Cco-Chr3:9382446 Cco08g1608 Cco-Chr8:27635433 8.30E-253 dispersed
Cco05g0142 Cco-Chr5:1139007 Cco08g1608 Cco-Chr8:27635433 1.80E-70 dispersed
Cco08g1608 Cco-Chr8:27635433 Cco10g2153 Cco-Chr10:34720266 6.20E-248 dispersed
Cco08g1608 Cco-Chr8:27635433 Cco04g0918 Cco-Chr4:24893945 2.10E-248 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220