Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1629 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTACCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCATTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGACGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCACAGGAGGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCTGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCGAGAATTTCACGGGATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGAAAAAATTACCTCCGAAGGAATTCCTCACATGATAAAGAGAGTAATAATGAAGTATTATCAACTCTCAGCTCAAAGATATGAAGTGTTTACGTCTATTCTCCACAGCATTTTTGTTGAAGAGGTATGCCTGAGATCTCCTTACAGCTCTTCTTTTTATTTCCTTACTCTTTCCAAATATGCTTAG 1410 41.56 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLATDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANHRRNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGLEENTSKQAKLSSVQHKNPNIYTNNTCSPFREFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWEKITSEGIPHMIKRVIMKYYQLSAQRYEVFTSILHSIFVEEVCLRSPYSSSFYFLTLSKYA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27819065 27823348 - CcPI632755_08g016290.1 Cco08g1629 186103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1629 469 Gene3D - 230 340 - -
Cco08g1629 469 Pfam E2F transcription factor CC-MB domain 239 338 IPR032198 GO:0046983(InterPro)
Cco08g1629 469 SUPERFAMILY E2F-DP heterodimerization region 235 338 IPR037241 -
Cco08g1629 469 PANTHER TRANSCRIPTION FACTOR E2F 104 409 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco08g1629 469 CDD E2F_DD 234 338 IPR032198 GO:0046983(InterPro)
Cco08g1629 469 FunFam E2F transcription factor 1 152 225 - -
Cco08g1629 469 MobiDBLite consensus disorder prediction 102 126 - -
Cco08g1629 469 Coils Coil 250 273 - -
Cco08g1629 469 MobiDBLite consensus disorder prediction 51 71 - -
Cco08g1629 469 MobiDBLite consensus disorder prediction 102 157 - -
Cco08g1629 469 Pfam E2F/DP family winged-helix DNA-binding domain 160 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco08g1629 469 Gene3D - 153 225 IPR036388 -
Cco08g1629 469 SMART E2F_TDP_2 158 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco08g1629 469 SUPERFAMILY Winged helix DNA-binding domain 158 221 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1629 K06620 - - csv:101211469 689.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2395 Cco-Chr2:36291562 Cco08g1629 Cco-Chr8:27819065 6.10E-63 dispersed
Cco06g1871 Cco-Chr6:28935436 Cco08g1629 Cco-Chr8:27819065 7.40E-08 dispersed
Cco08g1629 Cco-Chr8:27819065 Cco04g1250 Cco-Chr4:27876788 1.20E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59829 PF16421 E2F_CC-MB 5.70E-26 No_clan Cco TF