Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1629 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTACCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCATTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGACGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCACAGGAGGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCTGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCGAGAATTTCACGGGATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGAAAAAATTACCTCCGAAGGAATTCCTCACATGATAAAGAGAGTAATAATGAAGTATTATCAACTCTCAGCTCAAAGATATGAAGTGTTTACGTCTATTCTCCACAGCATTTTTGTTGAAGAGGTATGCCTGAGATCTCCTTACAGCTCTTCTTTTTATTTCCTTACTCTTTCCAAATATGCTTAG 1410 41.56 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLATDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANHRRNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGLEENTSKQAKLSSVQHKNPNIYTNNTCSPFREFHGMQRILPLHNNIDDDYWFQSNSQVSITHLWEKITSEGIPHMIKRVIMKYYQLSAQRYEVFTSILHSIFVEEVCLRSPYSSSFYFLTLSKYA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27819065 27823348 - CcPI632755_08g016290.1 Cco08g1629 186103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1629 469 Gene3D - 230 340 - -
Cco08g1629 469 Pfam E2F transcription factor CC-MB domain 239 338 IPR032198 GO:0046983(InterPro)
Cco08g1629 469 SUPERFAMILY E2F-DP heterodimerization region 235 338 IPR037241 -
Cco08g1629 469 PANTHER TRANSCRIPTION FACTOR E2F 104 409 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco08g1629 469 CDD E2F_DD 234 338 IPR032198 GO:0046983(InterPro)
Cco08g1629 469 FunFam E2F transcription factor 1 152 225 - -
Cco08g1629 469 MobiDBLite consensus disorder prediction 102 126 - -
Cco08g1629 469 Coils Coil 250 273 - -
Cco08g1629 469 MobiDBLite consensus disorder prediction 51 71 - -
Cco08g1629 469 MobiDBLite consensus disorder prediction 102 157 - -
Cco08g1629 469 Pfam E2F/DP family winged-helix DNA-binding domain 160 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco08g1629 469 Gene3D - 153 225 IPR036388 -
Cco08g1629 469 SMART E2F_TDP_2 158 223 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco08g1629 469 SUPERFAMILY Winged helix DNA-binding domain 158 221 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2395 Cco-Chr2:36291562 Cco08g1629 Cco-Chr8:27819065 6.10E-63 dispersed
Cco06g1871 Cco-Chr6:28935436 Cco08g1629 Cco-Chr8:27819065 7.40E-08 dispersed
Cco08g1629 Cco-Chr8:27819065 Cco04g1250 Cco-Chr4:27876788 1.20E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59829 PF16421 E2F_CC-MB 5.70E-26 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1629 K06620 - csv:101211469 689.878