Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1634 ATGTGCAATTTCAGGACTCCCTATGTCCAAGAACGGGTTAATATTGGTTCTGGCCCGCCAGGATCGAAAGTTAGGTGGTTTCGTTCTTCAAGTGATGAGCCTAGATTTATCAACACCGTGACATTTGACAGCAAACCTGAATCTCCGACTCTTGTAATGATTCATGGTTATGCTGCTTCTCAAGGATTCTTCTTCCGGAATTTTGATGCTCTTGCCAGTCGCTTCCGGGTTATTGCCGTCGATCAACTTGGGTGGGGAGGATCTAGCAGGCCCGATTTTACGTGCAAAAGCACAGAAGAAACTGAAGCATGGTTTATAGATTCTTTTGAGGAGTGGCGAAAAGCAAAAAACATCAGCAATTTTATTTTACTTGGACACTCGTTTGGTGGATACGTTGCGGCTAAATATGCTCTCAAGCATCCTGAGAACATCAAACACCTAATTTTAGTGGGACCTGCTGGATTTTCTTCAGAGTCGGATGCCAAGTCTGAGACGATTACACGGTTTAGAGCTACCTGGAAAGGAGCGATTTTGAGTCATTTGTGGGAGTCAAATTTTACTCCACAGAAGCTTGTTAGGGGTTTGGGCCCTTGGGGACCAGATCTTGTTCGCAAATACACAAGTTCTAGGTTCGGGACATACTCAATTGGGGACGTATTGAATGATGAAGAATCCAGATTGCTATCAGATTATGTATATCACACGTTAGCAGCCAAGGCGAGTGGAGAATTGTGCTTGAAATACATATTTGCATTTGGTGCATTTGCTCGGATGCCACTTCTACAGAGTGCATCTGAATGGAAAGTTCCTACAACATTTATATACGGTTTTCAAGATTGGATGAACTATCAAGGTGCTCAAGAAGCTCGCAAGAGTATGAAGACGCCTTGCGAAATATTACGGGTTCCTCAGGCTGGTCACTTTGTGTTCATAGACAACCCTAGTAGTTTTCACTCGACCGTCTTCTACGCGTGCCGAAGATTCCTCTCTTCCGAACCTGATAAAGAATCTTTACCAGAAGAGAGATACACCAAAATTCACCAAAGCTCACTGAAGAAGAATAGGAAGAAGAAGAAGCCTTTAACTTTGCTCCGCCGGAAAATACGCATTCCGACGGAAACAATGTTGAGTCACTCAACCACCGGTCTTCACAGCCGCTCACTTTTCACATTTCCACGCCTTAAATCACGACGGCTCAACCACTCCGGTGGGGGTAACGCCTCTGTGAAGTGTGCCGCTAGCAAATGGGCCGAGCGACTTCTCGGAGATTTCCAATTCCTCTCCGATTCCTCCTTTGACCACTCCCATTCTTTCTCCTCCTCCGCTGTTACTCTCTCCCCTTCTTTCCCTCCCCCAATTGCCTCCCCTGAGCGCCAAGTTACAATTCCCATCGATTTCTACCGAGTTCTTGGCGCCGAGACGCATTTTCTTGGGGATGGGATTCGGAGAGCTTACGAAGCTAGAGTTTCGAAGCCGCCGCAGTATGGGTTTAGCCAGGAGACTCTGATAAGTCGCCGGCAGATTCTTCAGGCAGCTTGCGAAACCTTGGCGGACCATACTTCGCGGAGAGAGTACAATCAAAGCCTTTCGGATGATGAAGATGGTACCATTCTCACGCAAGTCCCTTTCGATAAGGTTCCTGGTGCTTTGTGTGTGTTGCAAGAAGCTGGAGAGACAGCATTGGTTCTTGAAATTGGAGAGAGCTTGCTCAGAGATAGGTTGCCAAAATCATTCAAGCAAGATATTGTCCTGGCCCTGGCTCTTGCTTATGTTGACGTATCAAGGGATGCTATGGCATTATCTCCACCTGATTTTATTCAGGGTTGCGAAGTGCTCGAGAAGGCCTTGAAGTTGTTGCAGGAGGAGGGTGCCAGTAGCCTTGCACCAGATTTGCTTGCACAAATTGATGAGACATTGGAAGAGATCACACCTCGATGTGTTCTGGAACTTTTAGCTTTGCCTCTTGGTGACGAGTGGCGAACAAGAAGAGAAGAGGGTCTCCATGGAGTGCGGAATATTCTGTGGGCTGTTGGAGGAGGGGGAGCAACAGCTATTGCTGGCGGATTCACCCGTGAAGATTTTATGAATGAGGCATTTGAACGAATGACAGCATCTGAGCAGGTTGATCTCTTTGTAGCCACACCAACAAATATTCCTGCAGAAAGTTTTGAAGTTTATGGAGTGGCACTTGCACTTGTGGCACAGGCCTTTGTTGGCAAAAAACCACACCTTATCCAAGATGCTGACAACCTCTTCCAACAACTTCAGCAAACTAAGGAAGCTGTTGTTGGGACTGCTGTCGCAGCATATGCACCTCGTGAGGTTGATTTTGCTCTTGAGAGGGGGCTATGTTCCCTACTTGGTGGAGAACTTGACGAGTGTCGATCATGGTTGGGCTTAGACAGTGAGAATTCACCTTACAGAAATCCAGCTATTGTAGATTTTATCCTCGAAAATTCAAAGGGTGATGATGAAAATGACCTTCCGGGGCTATGTAAGCTGTTGGAGACATGGTTGGCAGAAGTAGTGTTCTCCAGATTTAGAGACACTAAAAATATTTATTTTAAACTTGGAGATTACTATGATGATCCTACTGTTCTGAGGTACTTAGAGAAACTGGAAGGAGTTAACGGATCACCCCTAGCTGCAGCAGCAGCTATAGTGAAGATTGGTGCTGAGGCTACTGCCGTTTTAGATCATGTGAAGTCCAGTGCAATTCAGGCACTGCGGAAGGTGTTTCCCCTCACTCAGAACAGTTATAGGCGTGAGGCAGAAGCAGAAATGGAATATGTTTTTCCTGCTGTAAATAGTCCGATGCCTTTAGTGAACTTTGATGAGAATGAACGTACTAACTTTTCTGAGGTTTCTGAGAGAGCTAAAGCTGGTGAAATAAATGATGAAAAACCAATTACTGATCAAATTAAAGATGCAAGTGTGAAGATCATGTGTGCTGGTTTGGCAGTTGGGTTGTTGACTTTGGCTGGTTTGAGATTTTTACCTGCTAGAAATAACGCTACTGCTCTACTTAAAGAAGGTGGTTCCTCAACGGCATCCACTACGAGTGTGGCATCCGAAGTTGAAAAGTCCAGTGAGGAACCATCCAGGATGGATGCACGAATTGCAGAAGGTCTAGTTCGGAAATGGCAGAGCATTAAGTCTCTGGCTTTTGGACCCGAACATTGCCTTGCAAAACTATCAGAGGTTTTAGATGGTGAGATGTTGAAGATCTGGACGGATCGTGCAGTCGAAATCTCAGAACTCGGTTGGTTCTATGACTACACTCTCTCAAATCTGACCATTGACAGTGTAACAGTGTCGTTAGATGGTCGGCGTGCCATGGTGGAAGCAACTCTTGAAGAATCAGCCTGTCTCATTGATGTAAAACATCCAGAACACAATGATTCGAACAGAAAAACCTATACGACGAGATACGAGCTGTCATACCTCAGTTCTGGATGGAAAATTACCAAAGGTGCCGTTCTTGAATCATAA 3492 45.56 MCNFRTPYVQERVNIGSGPPGSKVRWFRSSSDEPRFINTVTFDSKPESPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNISNFILLGHSFGGYVAAKYALKHPENIKHLILVGPAGFSSESDAKSETITRFRATWKGAILSHLWESNFTPQKLVRGLGPWGPDLVRKYTSSRFGTYSIGDVLNDEESRLLSDYVYHTLAAKASGELCLKYIFAFGAFARMPLLQSASEWKVPTTFIYGFQDWMNYQGAQEARKSMKTPCEILRVPQAGHFVFIDNPSSFHSTVFYACRRFLSSEPDKESLPEERYTKIHQSSLKKNRKKKKPLTLLRRKIRIPTETMLSHSTTGLHSRSLFTFPRLKSRRLNHSGGGNASVKCAASKWAERLLGDFQFLSDSSFDHSHSFSSSAVTLSPSFPPPIASPERQVTIPIDFYRVLGAETHFLGDGIRRAYEARVSKPPQYGFSQETLISRRQILQAACETLADHTSRREYNQSLSDDEDGTILTQVPFDKVPGALCVLQEAGETALVLEIGESLLRDRLPKSFKQDIVLALALAYVDVSRDAMALSPPDFIQGCEVLEKALKLLQEEGASSLAPDLLAQIDETLEEITPRCVLELLALPLGDEWRTRREEGLHGVRNILWAVGGGGATAIAGGFTREDFMNEAFERMTASEQVDLFVATPTNIPAESFEVYGVALALVAQAFVGKKPHLIQDADNLFQQLQQTKEAVVGTAVAAYAPREVDFALERGLCSLLGGELDECRSWLGLDSENSPYRNPAIVDFILENSKGDDENDLPGLCKLLETWLAEVVFSRFRDTKNIYFKLGDYYDDPTVLRYLEKLEGVNGSPLAAAAAIVKIGAEATAVLDHVKSSAIQALRKVFPLTQNSYRREAEAEMEYVFPAVNSPMPLVNFDENERTNFSEVSERAKAGEINDEKPITDQIKDASVKIMCAGLAVGLLTLAGLRFLPARNNATALLKEGGSSTASTTSVASEVEKSSEEPSRMDARIAEGLVRKWQSIKSLAFGPEHCLAKLSEVLDGEMLKIWTDRAVEISELGWFYDYTLSNLTIDSVTVSLDGRRAMVEATLEESACLIDVKHPEHNDSNRKTYTTRYELSYLSSGWKITKGAVLES 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27850420 27859517 + CcPI632755_08g016340.1 Cco08g1634 186108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1634 1163 MobiDBLite consensus disorder prediction 1011 1035 - -
Cco08g1634 1163 SUPERFAMILY Chaperone J-domain 463 530 IPR036869 -
Cco08g1634 1163 SUPERFAMILY alpha/beta-Hydrolases 40 321 IPR029058 -
Cco08g1634 1163 FunFam Probable 1-acylglycerol-3-phosphate O-acyltransferase 35 325 - -
Cco08g1634 1163 Pfam ARC6-like, IMS domain 1041 1156 IPR025344 -
Cco08g1634 1163 MobiDBLite consensus disorder prediction 1011 1027 - -
Cco08g1634 1163 Gene3D alpha/beta hydrolase 35 326 IPR029058 -
Cco08g1634 1163 PRINTS Alpha/beta hydrolase fold signature 74 89 IPR000073 -
Cco08g1634 1163 PRINTS Alpha/beta hydrolase fold signature 137 150 IPR000073 -
Cco08g1634 1163 PRINTS Alpha/beta hydrolase fold signature 123 136 IPR000073 -
Cco08g1634 1163 PANTHER PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC-RELATED 379 1162 IPR044685 GO:0010020(PANTHER)|GO:0031357(PANTHER)
Cco08g1634 1163 Pfam alpha/beta hydrolase fold 49 314 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1634 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1615 Cco-Chr8:27679251 Cco08g1634 Cco-Chr8:27850420 1.90E-200 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007804 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 36