Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1635 ATGAACAAAATAATGGGAGGTGAGGAGCTAATACAGGACGTTATTCAAGGTTCAAATGGTCTAGAAGAAACAATTCGTGTTTCTATTAGGTTAAGACCATTGAACGATAAGGAATTGGCTAAAAACGACTCGTCGGATTGGGAATGTATCAACAATAACTCTGTCGTGTTCAGAAGTACTTTACCGGAACGCTCTATGTTTCCCCAATCTTACACATTTGATAGAGTATTTGGAGTTGACAGTACAACGAAGCAAGTTTATGAAGAAGGGGCCAAAGAAGTTGTTCTTTCTGTGGTCAATGGGATTAACTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACTTTCACCATGAATGGAGTCACTCAATATTCTGTGGCAGACATTTATAATTACATGGAGTCGCATCGAGACAGAGAGTTTGTGCTGAAGTTTTCAGCGATTGAGATATACAATGAAGCTGTTAGAGATCTCCTTAGCTTAGAAAATATCCCACTTAGACTGCTTGATGATCCTGAGAAAGGAACCGTTGTTGAGAAACTTACAGAGGAGACACTGAAAGACAGGAATCATCTCCAGGAGCTTCTTTCCTTCTGTGAAGTTCAAAGAAAGATAGGGGAGACATCTCTGAATGAAACCAGCTCCAGATCCCATCAAATCCTAAGACTAACAATTGAAAGCTCCGCTCGCAAATACAAGAAGTCTGAAAGTTCAAGCACTCTCACCGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAAACAAATTCTGCTGGTACAAGACTGAAAGAAGGTTGTCACATCAATCGTAGTTTGCTGACTTTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGGAACGGACATATACCTTATAGAGATTCCAAGTTAACACGCATACTGCAGAATTCTCTAGGTGGAAATGGTCGAACGGCTATCATTTGTACTATGAGTCCTGCACGTAGCCATGTCGAACAATCAAGAAATACATTGCTATTTGCTACTTGTGCAAAAGAGGTGAGTACAAATGCACAAGTCAATGTGGTAGTTTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAAGAATTGGCTAGACTTGAGAGCGAGATGAAGAGCTTAAAACCACTTCCTGTCAAAGGTGATTCTACTTCATTATTGAAAGAGAAAGAACTTCTAATTGAACAGATGGACAAAGAGATAAAGGAATTGACTCGGCAACGTGATCTTGCTCAATATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCTAAGTGAAAATACAGTACAAACAATACCAGATCTAGTTGACCTAGATCTAGATGTACGTTCTGATGACTCAAGTCTCAAAACTTTTGACACATTTACTGCACATGAAGAGAATAGCCCTCACAAGATTGATCCTCTATTCACTATGAGTCATGAGGACAATTTTCTACTGGATAGCAGTACTCCTGAATTGGCTGGACCCGATCCTTATCAGGACTGGGAAGAGATTGCTCAACGTGTTCATGCAAATTCTGAAGATGGGTGTAAGGATGTTCAATGCATTGAACTGGAAGAATCAAAAGAATCAAAAGAATCACTAAATGAAAATGGTGATTTAACTTTAGCTAGACTGGAAGACAATGAAGGTCAGATGATTAGTAGTTTTGGCACTAATCAAGCGACATCCCCACAAAGGAAGAATAAGGAGATAATTACAAACAAAGATTATACTTATGATGGTTTTATGCCAAAAACAGCTGAGATGCAGAAAACATTGAATTGTATTTTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATTGAAGCAGCTAAATCTCGTTTTCAGAACTTAAAGTTGGCCAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATCCCACCTTCTACTTTGATTGAAAAGGCAGAAGAGGATAAGAAACCTCGAATCGTTGGATCTGAAGTGAACTTCTCTGGACAAGCAGAAGGTAGTCGGAGAAAGCGCGGTTTAAGCTGTGGGAATTTGGAGGAAAATTTGGACACCAAAGACTCACATTCTGTATGTAGTCACTGTTCGGAAGCCAAACCTTTACAAATAATAGATGAAGACGATGATGATAATACTAGTGTTCTCAACTTTTCTACTGAAAAGAAAGGAAAGGGCAAAAATAGGATAAAGAAGCGATCTGGTTCGAGGCTGGGGAGGGTCTCTAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTAACATGGAAGAGGCACAAGAACTTCAGGCTCATTCTGAGTGGGTTCTAGAGTTCCAAGGTCAACAAAGAGATATAATTGAGCTTTGGGATGCTTGCAATGTACCATTGGTCCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTTCTGATGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATTTCTCGATCAATCAATGCATCGGGAAGGAGCGACACCATCACGCAAGCTTCGAGCTTGAAGGCTCTAAACCGCGAGAGAGAAATGTTGGCGAGGCGAATGAAAAAGAAGTTCTCAGTGAAAGAAAGAGACGCCCTTTACCAGAAGTGGGGTATCGACTTGAAGACGAAGCAACGAAGCATACAATTGGCACGAATGCTTTGGTCGAGAACAAAGGATTTCGACCATATACACGAAAGTGCTGCCCTTGTGGCAAAGCTCATTGGATTTGTGGAACCTTCTCAGGTTTCTAGGGAGATGTTTGGGCTATCCTTCTCACTTCAATCCTTAGATCACAGATCTTTTCCCTGGAAAAGGAACATGTCTCTTCCTTTTTGA 2853 40.13 MNKIMGGEELIQDVIQGSNGLEETIRVSIRLRPLNDKELAKNDSSDWECINNNSVVFRSTLPERSMFPQSYTFDRVFGVDSTTKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTFTMNGVTQYSVADIYNYMESHRDREFVLKFSAIEIYNEAVRDLLSLENIPLRLLDDPEKGTVVEKLTEETLKDRNHLQELLSFCEVQRKIGETSLNETSSRSHQILRLTIESSARKYKKSESSSTLTATVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAQVNVVVSDKALVKQLQKELARLESEMKSLKPLPVKGDSTSLLKEKELLIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSENTVQTIPDLVDLDLDVRSDDSSLKTFDTFTAHEENSPHKIDPLFTMSHEDNFLLDSSTPELAGPDPYQDWEEIAQRVHANSEDGCKDVQCIELEESKESKESLNENGDLTLARLEDNEGQMISSFGTNQATSPQRKNKEIITNKDYTYDGFMPKTAEMQKTLNCILNLYPSEQSFSSIEAAKSRFQNLKLARSKSCLTVLMTIPPSTLIEKAEEDKKPRIVGSEVNFSGQAEGSRRKRGLSCGNLEENLDTKDSHSVCSHCSEAKPLQIIDEDDDDNTSVLNFSTEKKGKGKNRIKKRSGSRLGRVSKKEEPKETTQEVNMEEAQELQAHSEWVLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAISRSINASGRSDTITQASSLKALNREREMLARRMKKKFSVKERDALYQKWGIDLKTKQRSIQLARMLWSRTKDFDHIHESAALVAKLIGFVEPSQVSREMFGLSFSLQSLDHRSFPWKRNMSLPF 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27860982 27867396 - CcPI632755_08g016350.1 Cco08g1635 186109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1635 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 380 IPR027417 -
Cco08g1635 950 Coils Coil 355 382 - -
Cco08g1635 950 MobiDBLite consensus disorder prediction 719 755 - -
Cco08g1635 950 SMART kinesin_4 22 354 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1635 950 CDD KISc_CENP_E 24 346 - -
Cco08g1635 950 PANTHER CENTROMERE PROTEIN E 21 934 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cco08g1635 950 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco08g1635 950 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1635 950 Pfam Domain of unknown function (DUF3490) 773 932 IPR021881 -
Cco08g1635 950 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1635 950 MobiDBLite consensus disorder prediction 741 755 - -
Cco08g1635 950 Coils Coil 392 426 - -
Cco08g1635 950 Gene3D Kinesin motor domain 15 377 IPR036961 -
Cco08g1635 950 FunFam Kinesin-like protein 18 377 - -
Cco08g1635 950 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1635 950 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1635 950 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1635 950 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1635 K11498 - - csv:101212680 1612.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0889 Cco-Chr7:20689380 Cco08g1635 Cco-Chr8:27860982 4.50E-104 dispersed
Cco08g1635 Cco-Chr8:27860982 Cco11g0016 Cco-Chr11:200332 1.30E-138 dispersed
Cco01g0478 Cco-Chr1:4685900 Cco08g1635 Cco-Chr8:27860982 3.50E-27 transposed
Cco01g1678 Cco-Chr1:29514785 Cco08g1635 Cco-Chr8:27860982 7.00E-164 transposed
Cco11g0411 Cco-Chr11:4253588 Cco08g1635 Cco-Chr8:27860982 6.20E-76 wgd
Cco02g0498 Cco-Chr2:4620805 Cco08g1635 Cco-Chr8:27860982 6.40E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32