Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1638 ATGAGAAATGTCTTGGACATCCGCCTAGTGGCAAACCGGTATGCCGCAAAATTGCAACTCTGTTCCCCACAGGACCCGGCTTCATTCTCACTTGCTCGGGCAGTCCATGGCCATATGATTGCTTCCGGATTCAAGCCTCGTGGGCATTTCCTTAATCGTTTGCTGGAAATCTACTGTAAATCGTCGAATCTTGTGTATGCACGCCAGCTGTTCGACGAAATTCCCAACCCAGATGCTATAGCAAGGACTACGTTGATTTCGGCTTATTCTGGTTTGGCAAATCTGGAACTGGGTCGAGAAATATTTAATGGAACTCCATTGCATCTGAGGGATACTGTTTTCTACAATGCAATGATCACTGGTTATTCGCACAACGGTGATGGTCATTCTGCTCTTGAGCTGTTTCGTGCTATGCGACGAGATGACTTCCGGGCTGATGACTTTACATTTACAAGCGTTCTCAGTGCTTTAGTGCTCGTTGTTGACAATGAGCAGCAGTGTGGTCAGATGCATTGTGCAGTAGTGAAAACGGGAATGGAGTGTGTTTCTTCTGCAGTGTTGAACGCTCTTCTGTCTGTTTATGTCAAGTGTGCATCACCATTAGGGATATCATCTTCAGCAATGGTTTCGGCTAGGAAATTGTTTGACGAAATGCCTAAGAAGGATGAGTTAACATGGACGACGATGATTACTGGGTATGTGAGGAATGATGATCTGAATGGGGCACGTGAAGTTTTTGATGCAATGACTGAAAAGCTTGGGGCAGCATGGAATGCCATGATATCTGGATATGTGCACTGTGGTTGTTTTCAGGAAGCATTGATAATGTGTAAGAAAATGCGTTTACTCGGAATTCGGTACGATGATGTCACCTATACGACCATAATCAGTGCTTGTGCCAATGGTGGATTCTTTGAAATGGGGAAACAGTCGATGAGGCACGGAAGATTTTTTATGAGATGCAAGTTAGAAATATTATTACTTGGAATGCAATCTTATCAGGGATTGGCACAAAATGGATTTGGAGATGAGGGTTTGAAGTTGTTCAAGCAAATGAGGTTGGATGCTTTTGAACCTTGTGATTATGCATTTGCAGGAGCACTTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATGGTCGCCAGCTCCATGCTCAACTTGTTCACCTGGGCTACGAGTCAAGCCTTTCTGTTGGCAATGCAATGATCTCAATGTATGCAAGATGTGGAGTGGTTGAGGCTGCAGAATCTGTGTTTGTCACTATGCCTTCTGTAGACTTGGTTTCATGGAATGCAATGATTGCAGCACTGGGACAACATGGGCATGGTTTAAAAGCAATTGAACTTTTTGATCAAATGTTGAAAGAGGGTGTATTCCCTGATAGAATAACATTTCTGACCGTTCTCACTGCATGTAGCCATGCAGGGTTGGTTGCGGAGGGACGCCATTATTTTAATTCAATGTTGGGAAGTTATGGTATCACCCCTGGTGAAGATCATTATGCTCGAATGGTTGATTTGTTTTGTCGAGCCGGAATGTTCTCATATGCAAGGAATGTCATTGACACTATGCCTTCTAAACCTGGTGTGCCAGTTTGGGAGGCTCTTCTTGCCGGTTGCCGGATTCATGGGAACATGGATTTGGGAATAGAAGCTGCTGAACAACTTTTTGACCTAATGCCACAACACGATGGAGCCTATGTACTTTTGTCGAACATGTATGCTGATGCAGGTCGGTGGAATGACGTTGCTAAGGTGCGGAAATTGATGAGGGACCATGCTGTCCAAAAGGAGCCTGCTTGTAGTTGGATTGAGGTTGAGAATAAGGTTCATGTGTTCATGGTCGATGATGATGTGCACCCTGAGGTGCTATCTATCTACCGTTACTTGGAGCAGGTAGGCCTTGAAATGAAGATATTAGGATATATCCCAGACACTAAATTTGTGTTGCATGATATGGAATATGAACAAAAGGAACATGCCTTGTCTACTCACAGTGAGAAGCTCGCTGTCGGGTTTGGAATTATGAAGCTTCCTCCAGGTGCAACAGTCAGGGTTTTCAAGAACCTCAGGATCTGTGGGGATTGCCATAATGCATTCAAGTTCATGTCTAAAGTGGCAAGTAGGGAGATTATAGTGAGGGATAGAAAGAGGAGATCATCTGTGAAACTGGGCACCAAGTCGGTGGATTTGCAAGGGGAGTTGAATGAATTAAAGGAAAGATGGAACCGCTGA 2235 44.34 MRNVLDIRLVANRYAAKLQLCSPQDPASFSLARAVHGHMIASGFKPRGHFLNRLLEIYCKSSNLVYARQLFDEIPNPDAIARTTLISAYSGLANLELGREIFNGTPLHLRDTVFYNAMITGYSHNGDGHSALELFRAMRRDDFRADDFTFTSVLSALVLVVDNEQQCGQMHCAVVKTGMECVSSAVLNALLSVYVKCASPLGISSSAMVSARKLFDEMPKKDELTWTTMITGYVRNDDLNGAREVFDAMTEKLGAAWNAMISGYVHCGCFQEALIMCKKMRLLGIRYDDVTYTTIISACANGGFFEMGKQSMRHGRFFMRCKLEILLLGMQSYQGLAQNGFGDEGLKLFKQMRLDAFEPCDYAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYARCGVVEAAESVFVTMPSVDLVSWNAMIAALGQHGHGLKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVAEGRHYFNSMLGSYGITPGEDHYARMVDLFCRAGMFSYARNVIDTMPSKPGVPVWEALLAGCRIHGNMDLGIEAAEQLFDLMPQHDGAYVLLSNMYADAGRWNDVAKVRKLMRDHAVQKEPACSWIEVENKVHVFMVDDDVHPEVLSIYRYLEQVGLEMKILGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNLRICGDCHNAFKFMSKVASREIIVRDRKRRSSVKLGTKSVDLQGELNELKERWNR 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27872136 27875070 - CcPI632755_08g016380.1 Cco08g1638 186112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1638 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Cco08g1638 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 252 IPR002885 -
Cco08g1638 744 NCBIfam pentatricopeptide repeat 114 146 IPR002885 -
Cco08g1638 744 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Cco08g1638 744 NCBIfam pentatricopeptide repeat 225 251 IPR002885 -
Cco08g1638 744 NCBIfam pentatricopeptide repeat 256 288 IPR002885 -
Cco08g1638 744 Pfam PPR repeat 400 423 IPR002885 -
Cco08g1638 744 Pfam PPR repeat 225 252 IPR002885 -
Cco08g1638 744 Pfam PPR repeat 335 353 IPR002885 -
Cco08g1638 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Cco08g1638 744 FunFam Pentatricopeptide repeat-containing protein 167 323 - -
Cco08g1638 744 Gene3D Tetratricopeptide repeat domain 49 170 IPR011990 GO:0005515(InterPro)
Cco08g1638 744 Pfam DYW family of nucleic acid deaminases 641 727 IPR032867 GO:0008270(InterPro)
Cco08g1638 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cco08g1638 744 Pfam E motif 543 605 IPR046848 -
Cco08g1638 744 Pfam PPR repeat family 256 301 IPR002885 -
Cco08g1638 744 Pfam PPR repeat family 110 157 IPR002885 -
Cco08g1638 744 Pfam PPR repeat family 426 473 IPR002885 -
Cco08g1638 744 PANTHER OS07G0578800 PROTEIN-RELATED 81 156 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Cco08g1638 744 FunFam Pentatricopeptide repeat-containing protein 424 633 - -
Cco08g1638 744 Gene3D Tetratricopeptide repeat domain 491 623 IPR011990 GO:0005515(InterPro)
Cco08g1638 744 Gene3D Tetratricopeptide repeat domain 332 490 IPR011990 GO:0005515(InterPro)
Cco08g1638 744 Gene3D Tetratricopeptide repeat domain 171 322 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1638 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1614 Cco-Chr8:27673758 Cco08g1638 Cco-Chr8:27872136 7.00E-303 dispersed
Cco08g1638 Cco-Chr8:27872136 Cco05g0953 Cco-Chr5:8326159 1.60E-115 dispersed
Cco08g1638 Cco-Chr8:27872136 Cco08g1640 Cco-Chr8:27895830 1.20E-14 proximal
Cco08g1638 Cco-Chr8:27872136 Cco08g1641 Cco-Chr8:27896665 2.20E-08 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002610 1 3 2 1 1 1 2 2 2 2 2 1 2 2 1 2 1 1 2 1 3 1 2 2 0 2 2 2 0 1 47