Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1643 | ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACGAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCCAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTACCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA | 1014 | 51.78 | MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTTAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAPLLDPSIYPAPLNAFMAGTQFFPPSRS | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27910397 | 27911800 | + | CcPI632755_08g016430.1 | Cco08g1643 | 186117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1643 | 337 | MobiDBLite | consensus disorder prediction | 272 | 308 | - | - | |
Cco08g1643 | 337 | Pfam | Domain of unknown function (DUF702) | 112 | 267 | - | - | |
Cco08g1643 | 337 | MobiDBLite | consensus disorder prediction | 278 | 308 | - | - | |
Cco08g1643 | 337 | NCBIfam | LRP1 C-terminal domain | 218 | 266 | IPR006511 | - | |
Cco08g1643 | 337 | MobiDBLite | consensus disorder prediction | 46 | 67 | - | - | |
Cco08g1643 | 337 | MobiDBLite | consensus disorder prediction | 167 | 188 | - | - | |
Cco08g1643 | 337 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 331 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Cco08g1643 | 337 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cco08g1643 | 337 | NCBIfam | putative zinc finger domain, LRP1 type | 114 | 156 | IPR006510 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2949 | Cco-Chr5:36992417 | Cco08g1643 | Cco-Chr8:27910397 | 1.30E-26 | dispersed | |
Cco08g1643 | Cco-Chr8:27910397 | Cco09g1462 | Cco-Chr9:19842313 | 2.80E-67 | dispersed | |
Cco04g1764 | Cco-Chr4:32614116 | Cco08g1643 | Cco-Chr8:27910397 | 2.60E-57 | wgd | |
Cco05g2102 | Cco-Chr5:29998011 | Cco08g1643 | Cco-Chr8:27910397 | 2.40E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59831 | PF05142 | DUF702 | 4.60E-68 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1643 | K27807 | - | csv:101213154 | 548.125 |