Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1643 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACGAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCCAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTACCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1014 51.78 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTTAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAPLLDPSIYPAPLNAFMAGTQFFPPSRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27910397 27911800 + CcPI632755_08g016430.1 Cco08g1643 186117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1643 337 MobiDBLite consensus disorder prediction 272 308 - -
Cco08g1643 337 Pfam Domain of unknown function (DUF702) 112 267 - -
Cco08g1643 337 MobiDBLite consensus disorder prediction 278 308 - -
Cco08g1643 337 NCBIfam LRP1 C-terminal domain 218 266 IPR006511 -
Cco08g1643 337 MobiDBLite consensus disorder prediction 46 67 - -
Cco08g1643 337 MobiDBLite consensus disorder prediction 167 188 - -
Cco08g1643 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 331 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cco08g1643 337 MobiDBLite consensus disorder prediction 1 24 - -
Cco08g1643 337 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2949 Cco-Chr5:36992417 Cco08g1643 Cco-Chr8:27910397 1.30E-26 dispersed
Cco08g1643 Cco-Chr8:27910397 Cco09g1462 Cco-Chr9:19842313 2.80E-67 dispersed
Cco04g1764 Cco-Chr4:32614116 Cco08g1643 Cco-Chr8:27910397 2.60E-57 wgd
Cco05g2102 Cco-Chr5:29998011 Cco08g1643 Cco-Chr8:27910397 2.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59831 PF05142 DUF702 4.60E-68 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1643 K27807 - csv:101213154 548.125