Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1647 ATGGATTATTTGTTTGCAGGTTTGGTTGTGGTAGTTGGCATGTGGAGGCCGATGGCGGATGGTGCAGATCAGATCAACAAAACGACGTCGGTTGTGAAAGTGGGTGTGGTTCTTGATTTAAGTACTTGGGTTGGGAAAATGGGTTTGAGTTGTATCAATATTTCCCTCTCCGACTTCTATTCTTCTCATCCTCAACACAACACAACACAACAATCCTCCTCCATGTCACTGACTCTAAGGATGATCTTGTGCTGGCTGCTACTCAAGGCAGCTGTTGCAGAGCTTGATCCTTATTATTCTTTTCCATATGAATTTATTCCCTTCCACGGTTCATCCTACGATGACTTGATAGTGGCTGTGTACAGAGGGGTGGGTGCAGTGATCATCAGGGAGACATTAGTGAGCAATCTATCAAGGTTAGTGGTGGTGATATGGTTCTTCGTAGTGTTCGTCCTAACACGGAGCTACACAGCTAGCTTAACGTCGTGGTTAACGGTTCAACAACTCCAACCAGTCACCGATATTGATCAGATAATAAAAAACAATTGGCATGTTGGATATCAAAAGGGCTCCTATGTTTACGACACATTAAAGTTTTTAGGCATTTATGCTGCCATTGATGAGATCCCTTACATGAAGCTCCTTCTTACAACACAATTTGGTGAATATACCATGGGGCCTTCTCAATACAATTCCGGTGGTTTTGGATTTGCCGTGTTGAGAGTGATTCAAAGTGATAAAATAAGCCAAATAGATAAGAAGTGGTTTGGGAAGAAAATCAGCCACCAATCTGTCAGTAGTGATGGTTTAGAGGCGTCTTCTTCAAGGCTTGACCTGAGTTACTTTAAGAGCTTATTCTTCATCTCCGCTTTTACAGCTATCTTCGCTCTCACCTTTTATTTCATCCATTGTTTCATTTCTAAACGAAGATTCAAAGTCCATTTCAATTACTCTGACTCCACTACCATATGGAGAATAATAACTGCCACCACTTTCCGTATTCTCTTAATGAAAGACGACAACCGTCAGGAGGATCAGAACAATGTCGGACCATCGCCGGCGGTTGCAGTAATGGACGAGGCCTCTTCGAGCACCAACACCCAATTCCCATCTCCTTCATCCCACGACTCTGTCTCAAGATTTGATGATACACGTACTAGTGAGCCATATGTTTAA 1176 42.77 MDYLFAGLVVVVGMWRPMADGADQINKTTSVVKVGVVLDLSTWVGKMGLSCINISLSDFYSSHPQHNTTQQSSSMSLTLRMILCWLLLKAAVAELDPYYSFPYEFIPFHGSSYDDLIVAVYRGVGAVIIRETLVSNLSRLVVVIWFFVVFVLTRSYTASLTSWLTVQQLQPVTDIDQIIKNNWHVGYQKGSYVYDTLKFLGIYAAIDEIPYMKLLLTTQFGEYTMGPSQYNSGGFGFAVLRVIQSDKISQIDKKWFGKKISHQSVSSDGLEASSSRLDLSYFKSLFFISAFTAIFALTFYFIHCFISKRRFKVHFNYSDSTTIWRIITATTFRILLMKDDNRQEDQNNVGPSPAVAVMDEASSSTNTQFPSPSSHDSVSRFDDTRTSEPYV 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27949165 27955555 - CcPI632755_08g016470.1 Cco08g1647 186121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1647 391 Gene3D - 29 199 - -
Cco08g1647 391 MobiDBLite consensus disorder prediction 358 377 - -
Cco08g1647 391 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 133 344 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco08g1647 391 MobiDBLite consensus disorder prediction 343 391 - -
Cco08g1647 391 Pfam Ligand-gated ion channel 130 291 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco08g1647 391 SUPERFAMILY Periplasmic binding protein-like II 150 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1647 K05387 - - csv:101213397 208.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1570 Cco-Chr8:27295462 Cco08g1647 Cco-Chr8:27949165 1.60E-49 dispersed
Cco08g1647 Cco-Chr8:27949165 Cco11g1939 Cco-Chr11:32016696 6.40E-15 dispersed
Cco08g1647 Cco-Chr8:27949165 Cco02g0189 Cco-Chr2:1813874 3.60E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016974 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 4