Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1649 | ATGGCGGACGCAGGCTCCGTCTCCCACAAGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCGGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCTCTCAACATGGGCATCAGTAAACTTGTCTTCCCTGTCTACCGAAACGTCATCGCTTTGCTCCTCCTCCTCCCCTTCGCATATTTCATCGAAAAGAAAGATAGGCCTGCACTCACTGTCAACTTTGTCCTTCAGTTCTTCCTACTCGCTCTTGTTGGAATTACAGCCAATCAAGGGTTTTATTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGGATTGAGCAAGTGCGACTGAACCGAAAAGATGGGATAGCGAAGGTGATGGGTACAATATGTTGCGTAGCCGGAGCGACGGTGATCACGTTATACAAAGGGCCCACCATCTACAGCCCAGCAACGACGACGGTGATGGTACAAGAGACAGCAGAGACGGCAGGGACGATGCTGATGGGGCCGGGAAAGTTCCCGTCGTTAGGCGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTACAAGCACCGGTGCTGAAAAAATATCCGGCTCGCCTCTCAGTTACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCCTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCTGAAGCCTTTAGCATCGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTATTTGGGAGGGATCATAGGAGCGGTGCTGATTATATCAGGACTGTACCTTGTGCTATGGGGAAAGAGCGAAGAAAAGAAGATCTTATTGGAAAGAGCTGTGATCCAGTCCGCCCCGGACCACGGCAGCAGCAGAACAAGTAGCCACGTCAAGCCGTCCATTACCCAGCCGCTTCTCCATCCTACAGCTGACAATGTTTGA | 1188 | 52.53 | MADAGSVSHKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTVNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTTVMVQETAETAGTMLMGPGKFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIALAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKILLERAVIQSAPDHGSSRTSSHVKPSITQPLLHPTADNV | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 27981629 | 27985394 | + | CcPI632755_08g016490.1 | Cco08g1649 | 186123 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1649 | 395 | MobiDBLite | consensus disorder prediction | 368 | 395 | - | - | |
| Cco08g1649 | 395 | Pfam | EamA-like transporter family | 27 | 163 | IPR000620 | GO:0016020(InterPro) | |
| Cco08g1649 | 395 | Pfam | EamA-like transporter family | 210 | 348 | IPR000620 | GO:0016020(InterPro) | |
| Cco08g1649 | 395 | PANTHER | WAT1-RELATED PROTEIN | 24 | 367 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cco08g1649 | 395 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 252 | 352 | - | - | |
| Cco08g1649 | 395 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 56 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1649 | Cco-Chr8:27981629 | Cco10g1627 | Cco-Chr10:29623308 | 1.10E-62 | dispersed | |
| Cco01g0133 | Cco-Chr1:1201939 | Cco08g1649 | Cco-Chr8:27981629 | 1.20E-57 | transposed | |
| Cco03g0812 | Cco-Chr3:8794163 | Cco08g1649 | Cco-Chr8:27981629 | 4.60E-57 | transposed | |
| Cco06g1649 | Cco-Chr6:27089218 | Cco08g1649 | Cco-Chr8:27981629 | 3.80E-110 | transposed | |
| Cco11g1651 | Cco-Chr11:29376152 | Cco08g1649 | Cco-Chr8:27981629 | 1.50E-60 | transposed | |
| Cco05g2103 | Cco-Chr5:30023300 | Cco08g1649 | Cco-Chr8:27981629 | 5.70E-165 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1649 | - | - | - | 0.0 |