Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1650 ATGGGAGTTGCCGCGTTTCGTCTTGGGTTTTCTGTTCTTTTAGTATTCGCTTTTGCGCTATGTGATTTGGGCGTTTGTAATGGCGGAATCACGAGCGGTTTTGTTCGGAATGACGACGTTGCGTCGGATATGCCGCTTGATAGCGACGTCTTTAGGTCTCCTCCTGGTAAAAATGCCGCTCAACAGGTTCATATTACACAGGGGGATTTTGAAGGGAAGAGTGTGATAATCTCTTGGGTGACACCGGATAAACCAGGTTCAAACAGAGTGGTTTATTGGGCTGAAAACAGTGACGTTAGAAACCATGCTGAAGGCTCTTTTGTTTCCTACAAGTATTTCAACTACACATCTGGTTACATTCATCACTGCACCATTGACAACTTAGAGTATGATACTAAATATTTCTACGTGATTGGGTTTGGGACTCTATCACGAAGGTTTTGGTTTACAACCCCTCCTAAAGTTGGCCCTGATGTGCCTTATACTTTTGGTCTTATAGGGGATCTTGGTCAAACACACGATTCCAATAGGACACTTACACACTATGAATTAAACCCAACAAAAGGACAGACTATGTTGTTCCTTGGAGACTTGTCTTATGCAGACCGTTATCCATTTCATGATAACACCAGATGGGACACATGGGGGAGGTTTGTGGAAAGAAGTGCAGCTTATCAACCTTGGATTTGGACTGCAGGGAATCATGAACTTGATTATGCTCCTGAAATTGGTGAAGGTGAACCATTTAAGCCTTATTTCCATCGTTACCGTGTCCCATATAATGCATCAGATGGCTCCTCTCACCTTTGGTACTCCATTAAGAGAGCTTCAGCTTATATAATCGTCTTGTCCTCTTACTCATCATATGTGAAAAGCAGCCCTCAATATAAATGGCTACAGAATGAGCTGCTGAAGGTAAACAGGGACGAGACTCCATGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATGTTCACCATTACATGGAAGGAGAAAGCATGAGAGTGGTCTTCGAGCCGTGGTTCGTCAAATATAAAGTTGATGTTGTCTTTGCCGGTCATGTTCATGCCTACGAACGATCTGAACGAATATCAAATATAGCATACAACGTTGTAAACGGGTTATGTTCTCCAGTTCATGATATAGATGCTCCAGTTTATATAACCATTGGAGATGGTGGAAACTCTGAAGGATTAGTAACTGAGATGACTGAACCACAGCCAAATTACTCGGCTTACCGTGAAGCCAGCTTTGGACATGGCACACTGGACATAAAGAACAGAACTCATGCCTACTTTGCTTGGCATAGGAACCAAGACGAATATGCTGTGGAAGCTGATTCCTTTTGGCTGCATAATCGACAATGGTGTCCATTTGGCAGATTCTCCTTTTTATCTCCTCCATCTGATTTGGAAGAGATTGGAAAAGTACAAACAAAGCACAGAATCAGATCAGATAAAAACGGAGCTGAAAAGTCTGAGACTGATAAAAAAGAATCAGATATCCGAACCCCACTTGCAATATAG 1533 42.4 MGVAAFRLGFSVLLVFAFALCDLGVCNGGITSGFVRNDDVASDMPLDSDVFRSPPGKNAAQQVHITQGDFEGKSVIISWVTPDKPGSNRVVYWAENSDVRNHAEGSFVSYKYFNYTSGYIHHCTIDNLEYDTKYFYVIGFGTLSRRFWFTTPPKVGPDVPYTFGLIGDLGQTHDSNRTLTHYELNPTKGQTMLFLGDLSYADRYPFHDNTRWDTWGRFVERSAAYQPWIWTAGNHELDYAPEIGEGEPFKPYFHRYRVPYNASDGSSHLWYSIKRASAYIIVLSSYSSYVKSSPQYKWLQNELLKVNRDETPWLIVLMHTPMYSSYVHHYMEGESMRVVFEPWFVKYKVDVVFAGHVHAYERSERISNIAYNVVNGLCSPVHDIDAPVYITIGDGGNSEGLVTEMTEPQPNYSAYREASFGHGTLDIKNRTHAYFAWHRNQDEYAVEADSFWLHNRQWCPFGRFSFLSPPSDLEEIGKVQTKHRIRSDKNGAEKSETDKKESDIRTPLAI 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27987999 27991385 + CcPI632755_08g016500.1 Cco08g1650 186124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1650 510 Pfam Iron/zinc purple acid phosphatase-like protein C 386 443 IPR025733 -
Cco08g1650 510 CDD MPP_PAPs 157 455 IPR041792 -
Cco08g1650 510 PANTHER ACID PHOSPHATASE RELATED 12 456 IPR039331 GO:0003993(InterPro)
Cco08g1650 510 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787(InterPro)
Cco08g1650 510 Gene3D - 156 465 IPR029052 -
Cco08g1650 510 Gene3D - 59 155 - -
Cco08g1650 510 MobiDBLite consensus disorder prediction 478 510 - -
Cco08g1650 510 SUPERFAMILY Purple acid phosphatase, N-terminal domain 41 153 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco08g1650 510 Pfam Purple acid Phosphatase, N-terminal domain 61 151 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco08g1650 510 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 59 155 - -
Cco08g1650 510 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 156 463 - -
Cco08g1650 510 SUPERFAMILY Metallo-dependent phosphatases 157 459 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1650 K22390 - - csv:101210805 888.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0409 Cco-Chr5:3364065 Cco08g1650 Cco-Chr8:27987999 7.80E-62 transposed
Cco06g0829 Cco-Chr6:9992314 Cco08g1650 Cco-Chr8:27987999 8.70E-71 transposed
Cco06g1342 Cco-Chr6:23810194 Cco08g1650 Cco-Chr8:27987999 1.40E-155 transposed
Cco02g0515 Cco-Chr2:4794956 Cco08g1650 Cco-Chr8:27987999 1.20E-201 wgd
Cco04g1762 Cco-Chr4:32597385 Cco08g1650 Cco-Chr8:27987999 7.90E-182 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1026 . . . . . . . . . . . . . . Sed04g3913 . . Bhi04g00213 Tan02g0773 Cmetu01g2623 . Hepe02g0485 . . Cla08g01452 Cam08g1937 Cec08g1511 Cco08g1650 Clacu08g1627 . Cre08g1413 . . . . . . . . Blo17g00768 . . . . . . Bma05g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97