Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1651 ATGTTGAAATCTTCATACAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACTTGGGGAAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTAGCCTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTCCCTCATCTTTCTCCTGTTTCTGCTTCTTCTTCTTCTTCTGATAATGTTGCTGCTAATTCTAATTCTAATTCTAATGCCAATGCCATTGTGGAAGATGTTGCTTCCTCTGTTTCTCATGAAAACAACAATAATAACACTGTATTGCCTAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGAGCTATGAGTATCAGTTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTATTGTTATGGAACATGAGCAGGATCATCGTCATCAAGGCTTTTTTGCTGCTAATTTGATGGAAACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA 636 39.94 MLKSSYNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPVSASSSSSDNVAANSNSNSNANAIVEDVASSVSHENNNNNTVLPKKRFREEEEEQIGGLWRAMSISLDDSIWVEAAMSLDFPIVMEHEQDHRHQGFFAANLMETNGNGGCGWDTLQWCL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27991758 27992393 - CcPI632755_08g016510.1 Cco08g1651 186125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1651 211 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1651 211 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1651 211 Pfam AP2 domain 32 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1651 211 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677(InterPro)
Cco08g1651 211 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1651 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 133 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cco08g1651 211 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Cco08g1651 211 SMART rav1_2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1651 211 MobiDBLite consensus disorder prediction 1 30 - -
Cco08g1651 211 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1651 211 CDD AP2 30 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1651 Cco-Chr8:27991758 Cco11g0613 Cco-Chr11:6571005 2.90E-30 dispersed
Cco05g2104 Cco-Chr5:30029291 Cco08g1651 Cco-Chr8:27991758 7.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59832 PF00847 AP2 2.60E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1651 - - - 0.0