Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1652 ATGGCCAACTTCAGCTTTCATTTTCTGACTGTCTTTCTTCTTCTTTTTCTTCTTCGCCCTCTTTCAGCTACTTCAAATGTTTCGGAGCTCTTTGAAATCTGGTGCACAGAGCATGGGAAATCGTATTCCTCCGCCGAAGAAAAGCTCTACAGGCTCAGTGTGTTTGCCGATAACTACGAATTTGTTACTCGTCACAACAATTTGGGCAATTCTTCTTATACCCTTTCTCTCAATTCTTATGCTGATCTTACCCACCATGAGTTTAAGGTCTTTCGCTTGGGTTTTTCCCCTGCTTTGCGGAACTTACGGCGGGTTCCGCCGCTACAACCCTCTATTCCACGGGATGTTCCCGATTCTTTAGATTGGAGGAAGAAAGGGGCGGTGACTGCTGTTAAGGATCAAGGAAGCTGTGGTGCTTGTTGGGCTTTCTCAGCTACAGGAGCCATTGAAGGGATCAACCAGATTATGACAGGGTCTCTTATTAGTCTCTCTGAACAGGAATTAATTGATTGTGACAGATCTTACAATTCTGGCTGTGAAGGAGGATTGATGGATTATGCATACCAATTTGTGATAAAAAACCATGGGATTGATTCTGAGAATGATTATCCTTTTCAGGGTCATGATGGATCGTGTCGTAAGGACAAGCTTAAGAGGAACGCTGTCACCATTGATGGCTATATTGATGTCCCTCCCAGTGATGAGGGAAAGTTACTGCAAGCAGTAGCAGCTCAACCTGTGAGTGTCGGTATATGTGGCAGTGAGAGAGCCTTTCAATTATACTCAAAGGGAATTTTCTCCGGTCCGTGTTCAACTTCTTTGGATCATGCTGTGTTGCTTGTAGGATATGGCTCAGAAAATGGAGTTGATTATTGGATTGTGAAGAACTCGTGGGGTAAAAGTTGGGGAATGGATGGTTATATGCACATGCAGCGCAACAGCGGCAATTCTGAAGGCGTTTGTGGAATCAACATGCTTGCTTCATATCCAACTAAAACAAGTCCTAACCCTCCTCCCTCCCCTCCTCCAGGTCCAACAAAATGTAGTATTTTTACTAGCTGTGGTGCTGGGGAGACCTGTTGTTGCGCAAAGAAATTCCTTGGCCTTTGTTTATCTTGGAAATGCTGTGGATTGAGCTCTGCTGTATGTTGCAAGGACGGTCGTCATTGTTGCCCCTTCAATTATCCCATTTGTGATACTGACAGGAACCTATGCCTCAAGCAAACGAGGAATGGTACAAGAACAGAAGCACTTGAGAATGGGAGTTCTTCCGGAACATCTGAACTTTCATGGATTAGCTTTGGAGGCTTCTTACCTCGGTCGAGGCCGGAGTTTTATCAGGTTTTGGCTCATCAGTTCCTTCAGGTTTCTGATCAGATTGCTACCTTTCAGGAACTTGTGTTGCTGCTTAAAGCACTTTTGTGA 1425 44.63 MANFSFHFLTVFLLLFLLRPLSATSNVSELFEIWCTEHGKSYSSAEEKLYRLSVFADNYEFVTRHNNLGNSSYTLSLNSYADLTHHEFKVFRLGFSPALRNLRRVPPLQPSIPRDVPDSLDWRKKGAVTAVKDQGSCGACWAFSATGAIEGINQIMTGSLISLSEQELIDCDRSYNSGCEGGLMDYAYQFVIKNHGIDSENDYPFQGHDGSCRKDKLKRNAVTIDGYIDVPPSDEGKLLQAVAAQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLLVGYGSENGVDYWIVKNSWGKSWGMDGYMHMQRNSGNSEGVCGINMLASYPTKTSPNPPPSPPPGPTKCSIFTSCGAGETCCCAKKFLGLCLSWKCCGLSSAVCCKDGRHCCPFNYPICDTDRNLCLKQTRNGTRTEALENGSSSGTSELSWISFGGFLPRSRPEFYQVLAHQFLQVSDQIATFQELVLLLKALL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27998364 28002518 + CcPI632755_08g016520.1 Cco08g1652 186126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1652 474 PRINTS Papain cysteine protease (C1) family signature 134 149 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1652 474 PRINTS Papain cysteine protease (C1) family signature 291 297 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1652 474 PRINTS Papain cysteine protease (C1) family signature 276 286 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1652 474 SUPERFAMILY Granulin repeat 345 378 - -
Cco08g1652 474 SMART Inhibitor_I29_2 31 88 IPR013201 -
Cco08g1652 474 Pfam Papain family cysteine protease 116 331 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1652 474 Pfam Granulin 359 406 IPR000118 -
Cco08g1652 474 SUPERFAMILY Cysteine proteinases 27 331 IPR038765 -
Cco08g1652 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 134 145 IPR000169 -
Cco08g1652 474 Pfam Cathepsin propeptide inhibitor domain (I29) 31 88 IPR013201 -
Cco08g1652 474 SMART pept_c1 116 331 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco08g1652 474 CDD Peptidase_C1A 117 330 IPR039417 -
Cco08g1652 474 FunFam Senescence-specific cysteine protease 19 332 - -
Cco08g1652 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 274 284 IPR025660 -
Cco08g1652 474 SMART GRAN_2 348 405 IPR000118 -
Cco08g1652 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 291 310 IPR025661 -
Cco08g1652 474 Gene3D Cysteine proteinases 16 333 - -
Cco08g1652 474 Gene3D Granulin 346 416 IPR037277 -
Cco08g1652 474 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 328 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1652 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1652 Cco-Chr8:27998364 Cco11g1951 Cco-Chr11:32067263 4.60E-92 dispersed
Cco08g1645 Cco-Chr8:27939533 Cco08g1652 Cco-Chr8:27998364 3.40E-50 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30