Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1654 ATGGGTGAAGAAGGTCAAGTTATTGCATGCCATAAGCAACCTGAATGGGAAGCTCTATTAGCCAAAGCCAAGGAATCTGGAAAACTGGCTGTGGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTGCAATCGCTCCATATTTCACAGAATTGGCTAAGAATAATCCCAGTGTCATTTTCCTGAAAGTGGACGTCGATGAATTGAATGCTGTTGCTAGCAAGTGGGACATTAATGCAATGCCGACGTTTGTTTTTCTGAAAGGAGGGGAAATAGTTCACAAGATTGTTGGTGCTGATAAAGCGGCGCTGTTGAAGAAAATAGAAGAGCTCAAAACTCCAACAGCTGCTACTACTTCTACTGCTTAG 369 44.44 MGEEGQVIACHKQPEWEALLAKAKESGKLAVVDFTASWCGPCRAIAPYFTELAKNNPSVIFLKVDVDELNAVASKWDINAMPTFVFLKGGEIVHKIVGADKAALLKKIEELKTPTAATTSTA 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28014119 28015077 + CcPI632755_08g016540.1 Cco08g1654 186128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1654 122 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Cco08g1654 122 Pfam Thioredoxin 10 109 IPR013766 -
Cco08g1654 122 CDD TRX_family 20 109 - -
Cco08g1654 122 PRINTS Thioredoxin family signature 38 47 - -
Cco08g1654 122 PRINTS Thioredoxin family signature 77 88 - -
Cco08g1654 122 PRINTS Thioredoxin family signature 30 38 - -
Cco08g1654 122 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cco08g1654 122 FunFam Thioredoxin 4 113 - -
Cco08g1654 122 PANTHER THIOREDOXIN 4 110 IPR050620 -
Cco08g1654 122 Gene3D Glutaredoxin 1 117 - -
Cco08g1654 122 SUPERFAMILY Thioredoxin-like 6 112 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1654 K03671 - - csv:101212030 203.756
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0373 Cco-Chr7:4066994 Cco08g1654 Cco-Chr8:28014119 9.50E-28 dispersed
Cco08g1654 Cco-Chr8:28014119 Cco10g1469 Cco-Chr10:27792000 6.80E-24 dispersed
Cco08g1653 Cco-Chr8:28009245 Cco08g1654 Cco-Chr8:28014119 8.30E-38 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56