Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1664 ATGTCAGCAGAAGAAAATGGGTCCCATCAAGAAAGAGAGATTAAAGAAGAAGAAGAAGAAGAAGAAACAGAAGAGGGGGTTTTTCTTCTTTTTCCCACTTGGGGTTTCTCTATTCCTTCTGATTCTATCATGGGATCTACTGTTTTCCACTTTCTTCAAGATCAGTGTTTCTTGTCTGTTCTAATGCTGTACCTTACATCTGTTTGCCTTTTGTTGAGCTTCGTTATAGCTGATTATAGTTACATCAACGTGTTCTTGATGGGAATGGCGACCCCTGTAGAGCCTCCAAATGGGGTTAGATCGCAAGGAAAACATTACTTTTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCTATCAAGCCGATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAACAGGGAAACAAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATTGATGCGCTCCGGACTTTGCGCGAATTGAAACTCCTTAGGCATCTTCGCCACGAAAATGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACAAACGATCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCCTAAAGTATCTGCATTCTGCGAACATTCTACATCGGGACTTGAAGCCAGGGAACCTCCTTGTCAACGCAAATTGTGATCTTAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAATGGGAAGAATCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAATTACGGGACGTCAATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAACTTCTCGGTAGGAAACCTATCTTCCCCGGTACAGAATGTCTGAATCAACTCAAATTGATAATTAACTTACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAATCCAAAGGCAAGAAGGTATATAAAATCCCTTCCATACTCTCCTGGGGCTCCTCTTTCCCGTCTTTATCCGAACGCTCATCCTCTTGCAATCGATCTGCTACAAAAGATGCTTGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTGCAACATCCTTACATGTCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCTGAGGATCTGGAAGAACATGCAGAAATGACATGTTTCCACCCTGAACATACTACGAGTAGTACCGCAGTGTATTCTTGA 1425 42.25 MSAEENGSHQEREIKEEEEEEETEEGVFLLFPTWGFSIPSDSIMGSTVFHFLQDQCFLSVLMLYLTSVCLLLSFVIADYSYINVFLMGMATPVEPPNGVRSQGKHYFSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINLLGSQREEDLEFIDNPKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTCFHPEHTTSSTAVYS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28095412 28098804 - CcPI632755_08g016640.1 Cco08g1664 186138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1664 474 FunFam Mitogen-activated protein kinase 204 433 - -
Cco08g1664 474 FunFam Mitogen-activated protein kinase 106 214 - -
Cco08g1664 474 SUPERFAMILY Protein kinase-like (PK-like) 112 414 IPR011009 -
Cco08g1664 474 Gene3D Phosphorylase Kinase; domain 1 107 443 - -
Cco08g1664 474 ProSiteProfiles Protein kinase domain profile. 120 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1664 474 MobiDBLite consensus disorder prediction 1 23 - -
Cco08g1664 474 Gene3D Transferase(Phosphotransferase) domain 1 204 433 - -
Cco08g1664 474 ProSitePatterns MAP kinase signature. 155 258 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1664 474 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
Cco08g1664 474 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 114 445 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco08g1664 474 SMART serkin_6 120 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1664 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1664 474 CDD STKc_TEY_MAPK 114 449 - -
Cco08g1664 474 Pfam Protein kinase domain 122 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0935 Cco-Chr7:21460458 Cco08g1664 Cco-Chr8:28095412 3.10E-166 dispersed
Cco08g1172 Cco-Chr8:23484820 Cco08g1664 Cco-Chr8:28095412 5.80E-113 dispersed
Cco08g1664 Cco-Chr8:28095412 Cco09g2440 Cco-Chr9:38590643 5.30E-88 dispersed
Cco08g1664 Cco-Chr8:28095412 Cco06g0350 Cco-Chr6:3933151 1.50E-114 transposed
Cco08g1664 Cco-Chr8:28095412 Cco01g0247 Cco-Chr1:2338710 1.50E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87053 PF00069 Pkinase 4.40E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1664 K20535 - csv:101213478 764.222