Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1669 | ATGCCTTTCCTCTGCTTTTGGTGCTTTGCCGCCGCTGCTCTCTCAATCGTCGCCGTTTTTCGATTTTATCTGAAGAATAAGCCGCCCCGCTCGCGGAGTTCGCATTCTTCTCCTCCTGGAAGCAGAGGTTTGCCTCTCATTGGAGAGACGCTCCAGTTCATGGCCGCCGTCAACTGCAGCAACGGCGTTTATGATTTCGTCACAACCCGCTGCCTCCGGTACGGAGGATGCTTTAAGACTCGAATATTTGGAGAGACGCATGTGTTTGTTTCGAGCAACGAATCGGCGAAGCTTATACTCAACGACGGCGGAGGCAGGTTCACTAAGAAGTATATAAAGTCCATTGCTGAGCTAGTCGGCCATCAAAGTTTGCTTTGTGCTTCACATTTGCACCACAAATTCTTACGTAATCGTCTCATCAATCTTTTCTCCTCCTGTTTTTTGGCCTCTTTCGTTACGCAATTCGATCAACAAATTGTTCTGACGTTTCGATGTTGGAATACTGGTTCCACCATTGTCCTCCTGAACGAAGCCCTCAAGATAACATGCAAAGCAATGTGCAAGATGCTGATAAGCTTAGAAAAGGAAAACGAAGTAGAGGCATTCCAGAAAGAGGTTGGTTATGTATGTGAAGCTATGCTTGCATTCCCATGGAGATTTCCAGGGACAAGATTCCACAAAGGCCTCAAGGCAAGAAGAAGAATCATAAAAATACTCGAAAGGATGATTCAAGAGAGACGAGAATCAGAGCCTCAGCATGGAGATTTCTTACAACGGCTGTTGACAGAGGAGGACGGTGGAGAACCGCTATCAGATGCAGAGATCGGAGATAATATATTGACGATGTTGATTGCTGGACAGGATACCACGGCGAGTGCCATCACTTGGATGATGAAGTTCTTACATGAGAATCAAGATGTACTCCAAAATCTAAAGGAAGAACAATTCAGAATATTGGGCAAAAAACAAGATCATGGGAGTTGTTTCCTTACTTTGGAAGATCTACGCAACATGCCTTATGCTGCCAAGGTAGTAAAAGAATCATTGAGGTTAGCATCTATCGTGCCATGGTTCCCAAGACTAATCCTTCACGATACTGAAATGGAAGGTTACAAAATCAAGAAAGGTTGGAATGTTAACATTGACGTGAGATCACTACACTTGGATCCTTCTCTCTATAAAGATCCTATCAAGTTTAATCCATCCAGGTTTGATGAAGAAGCAAAGCCCTTTAGCTTTCTAGCTTTTGGGATGGGAGGGAGGCAATGTCTAGGGATGAATCTAGCCAAAGCCATGATGCTTGTTTTTCTTCACCGCTTGGTGACTTCTTTCAGATGGAAGGTAATCGACTCCGACTCTAGCATTGAGAAGTGGGCCCTTTTTACCAAATTAAAGAGCGGTTGTCCAATCCTCATCACACGTATTGAATCTTAA | 1434 | 44.28 | MPFLCFWCFAAAALSIVAVFRFYLKNKPPRSRSSHSSPPGSRGLPLIGETLQFMAAVNCSNGVYDFVTTRCLRYGGCFKTRIFGETHVFVSSNESAKLILNDGGGRFTKKYIKSIAELVGHQSLLCASHLHHKFLRNRLINLFSSCFLASFVTQFDQQIVLTFRCWNTGSTIVLLNEALKITCKAMCKMLISLEKENEVEAFQKEVGYVCEAMLAFPWRFPGTRFHKGLKARRRIIKILERMIQERRESEPQHGDFLQRLLTEEDGGEPLSDAEIGDNILTMLIAGQDTTASAITWMMKFLHENQDVLQNLKEEQFRILGKKQDHGSCFLTLEDLRNMPYAAKVVKESLRLASIVPWFPRLILHDTEMEGYKIKKGWNVNIDVRSLHLDPSLYKDPIKFNPSRFDEEAKPFSFLAFGMGGRQCLGMNLAKAMMLVFLHRLVTSFRWKVIDSDSSIEKWALFTKLKSGCPILITRIES | 477 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28151943 | 28157169 | + | CcPI632755_08g016690.1 | Cco08g1669 | 186143 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1669 | 477 | SUPERFAMILY | Cytochrome P450 | 31 | 474 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | Pfam | Cytochrome P450 | 38 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | CDD | CYP90-like | 70 | 474 | - | - | |
| Cco08g1669 | 477 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 416 | 425 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco08g1669 | 477 | PRINTS | P450 superfamily signature | 423 | 434 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | P450 superfamily signature | 343 | 354 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | P450 superfamily signature | 285 | 302 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | P450 superfamily signature | 414 | 423 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | E-class P450 group I signature | 294 | 320 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | E-class P450 group I signature | 423 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | E-class P450 group I signature | 342 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | E-class P450 group I signature | 274 | 291 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | E-class P450 group I signature | 413 | 423 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PRINTS | E-class P450 group I signature | 382 | 406 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1669 | 477 | PANTHER | CYTOCHROME P450 26 | 38 | 444 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Cco08g1669 | 477 | Gene3D | Cytochrome P450 | 27 | 474 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1669 | Cco-Chr8:28151943 | Cco09g0966 | Cco-Chr9:9113550 | 9.70E-82 | dispersed | |
| Cco04g1741 | Cco-Chr4:32455840 | Cco08g1669 | Cco-Chr8:28151943 | 4.40E-115 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1669 | - | - | - | 0.0 |