Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1684 ATGGATATGAGAGAACAAGAGAAGGAAGTAATAATGCCTGGAGCTCCTGGTGGCGCCGGTGGTTATTCTCATATTTTTGGGGAAACTTCTTCCGAAAGGAGAATAGACTCGATTCATAACGGTTCTCATCACCATATCCAAACAGACCACCACGATGGAGACCGTGTTCCGGCTAGCGGCGAGAATGTTGGCGGCGGCGCCGGTGGAGGTAATTTTTCCTCTGGCGGCGGCAGATCCAAGGTGCGGGCGGCGGTTTCTGGAGTTAGGTATCGCGAATGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATTTACGACGGATGTGGAGAGTTTATGCCGAGTGGCGAAGACGGAACCCTAGAGGCACTGAAATGCGCTGCTTGTGAATGCCACCGCAACTTTCACCGGAAAGAAATCGACGGCGAGAGTCAATTGAACATTAGTCCTAATTACAGAAGAGGCCTAATGCTTAACCACCTTCAGCTTCCTCCGCCATTGCCCTCTCCTTCCGCTCTCCACGGTCACCATAAATTCTCCATGGCATTGAACCTCCATTCCAGTCCCACTGCTCCAATCATCGCTCCAATGAACGTTGCCTTCGCCGGCGGTGGTGGAAACGAGTCTTCCAGTGAGGATTTAAACGTTTTCCAGTCCAATGCCGAGGTCATGCCGCCGTCTTCCTTCTCCTTGTCGAAAAAGCGTTTCCGTACAAAGTTCACACAGGAGCAAAAGGATCGAATGCTTGAGTTCGCGGAGAAAGTCGGATGGAGGATTCAGAAGCAAGATGAAGAAGAAGTGGAAAGATTCTGTACGGAAGTCGGAGTGAAACGGCAAGTTCTCAAAGTCTGGATGCATAACAACAAGAACACCGTGAAGAAGCAGAACGAAAATCACGAACCTGAAATCGCCGGTACCGGCATTACAAATGAATCGTAA 939 50.27 MDMREQEKEVIMPGAPGGAGGYSHIFGETSSERRIDSIHNGSHHHIQTDHHDGDRVPASGENVGGGAGGGNFSSGGGRSKVRAAVSGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGESQLNISPNYRRGLMLNHLQLPPPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAFAGGGGNESSSEDLNVFQSNAEVMPPSSFSLSKKRFRTKFTQEQKDRMLEFAEKVGWRIQKQDEEEVERFCTEVGVKRQVLKVWMHNNKNTVKKQNENHEPEIAGTGITNES 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28265445 28266383 - CcPI632755_08g016840.1 Cco08g1684 186158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1684 312 MobiDBLite consensus disorder prediction 1 21 - -
Cco08g1684 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 291 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco08g1684 312 Pfam ZF-HD protein dimerisation region 88 140 IPR006456 -
Cco08g1684 312 MobiDBLite consensus disorder prediction 291 312 - -
Cco08g1684 312 SUPERFAMILY Homeodomain-like 225 295 IPR009057 -
Cco08g1684 312 FunFam Zinc-finger homeodomain protein 2 221 294 - -
Cco08g1684 312 Gene3D - 221 294 - -
Cco08g1684 312 MobiDBLite consensus disorder prediction 42 57 - -
Cco08g1684 312 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 89 140 IPR006456 -
Cco08g1684 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 90 139 IPR006456 -
Cco08g1684 312 MobiDBLite consensus disorder prediction 42 78 - -
Cco08g1684 312 NCBIfam homeobox domain, ZF-HD class 233 290 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1684 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1627 Cco-Chr1:28965930 Cco08g1684 Cco-Chr8:28265445 1.40E-30 dispersed
Cco07g0916 Cco-Chr7:21139965 Cco08g1684 Cco-Chr8:28265445 5.60E-43 dispersed
Cco08g1684 Cco-Chr8:28265445 Cco10g0813 Cco-Chr10:16698730 3.30E-38 dispersed
Cco11g0011 Cco-Chr11:140881 Cco08g1684 Cco-Chr8:28265445 2.50E-46 transposed
Cco04g1718 Cco-Chr4:32300706 Cco08g1684 Cco-Chr8:28265445 7.80E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59835 PF04770 ZF-HD_dimer 5.30E-30 No_clan Cco TF