Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1700 ATGGCCGGCCGCTTCGACTTTGGTTCTCGTTCCAATCTCTCCGTCTCCAGTCCTCTCCATGCTGCCAATGATGTTCAGGGATCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCAGGGGAGAGTAAGCATGGAATTGGAACTGGGGAAAACCATTTCAGTCATCAACCTGCTTATGGGAATCGCATGGACACGATGAAGGGATCTGAGAATTATGAGGATACGAATGACATACAGAAGAAAAAAGAAGTTTTTAGGCCATCCTTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGTGAGAAAGAGATGGGCGATAGTCGCAAGATGGATCGTTGGAATGAAGACTCATCCTCAAGAGTCTTTAGAGAATCTCGTCGAGGCCCTGCAGAACGCTGGTCTGATTCAAACAATCGGGATAATGTTCATTATGATCAACGGCGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAAAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGACAAAAATTTCTCGCATGTGTCCAATTATGGGAAAAATGACAGAGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCTTGCAGGGTCGAGGTAAGGGAGACCCCCCTCACCACCAAACCCAAACTCCAATCAAACAAGTCCCTGCATTTGCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCTTTAGGTCGTGGGATCATCAGTTCTGGTGTAAATCCTACCAATAATGTCTATACACCTCCTAATTATGTTGGAGCTTCTTCCGAGAAATCTGCAAGAGAGCCTTTCTACTACAAATATAGCAGAACAAAGTTGCTTGATGTTTTCAGGACTACCAATCTGACATCACAGCAAACTCTAAAAGATGGATTTGTGCCCGTCGCTACTCTTACGCTGGACGAACCTTTGGAGCCTCTTGCTCTTTGCGCACCAACTACGGAAGAAATGACTTTCTTGAAGGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAAGTGTCAAAGGATGGTCGAAACTCATCAGAATTTATGCAAACAAGACGAACGAAACTTGGTGTTTCACCTTCCTTAGGCAGTAGGGAGGATTTACCTCATGGCTTTGATGATTACAACGATGATAAGGATGACGCCACCACTAAACCTGGTCACACAAACCATTCTGAGGTCTCCACTGAGAGGCAGATGCCTTATCACAGGCCCCAGTCAAAAATTGAAGCCATTCAGGAACACATGGCACATAATAGTAGCACCTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGAAAAACAGATGAGGTGGCTGTCAATAGGGAATCAAGTGTTAAGGGGGGTACCAACGTTCATCCTGGCAGCACGTGGGATGCCTCATCACTTGAGCAACCTCTGAATACATCCTTGCCTGATTGGAGAGAAAATTCTAATAATATTAGCTCAGGAACTCCTGACAAGGGTTGGCTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAACTCAGCTACTCCATCTTATCCGAAGGACAATCCCAAATGGCAGACCGGTGAAGAATCTATCATTAGAAGGCAGCTTTCAGGGATTTTGGACAAGGAACAAGTAGCAAGGAAAACTGTTCAATCTGCTCCAGAGGATTTGCAACTTCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCTTTTAGTGGTGCTGACATTATTCAGTGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCCTGTAAATGCACCAAATGACTTGCCATTTGCAGCACTTGGTGATGTTATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTAGTGGACCAAAGCAGAATGAATTTGCAGATTCATTAGGTAATGCGAGTTATGGTAGTTTGGGAAAGCTTCATACTGCATTGAATGAGATAGATACTATGAGGAATGAGACAAGGCATAAACATGGCTCCACGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCCGGTAATATAGGTTCTTCACCTCTTGAGAAAAGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAAATAATTCTAATAGTTTGCCTTCGTTGGGGATAGACAATGGAAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAAAGGTCTTTGTCCAACCCTTATGCATTTTGGCCTGGAATAGATGCTACATCCAAGGTATCTAAGCCAGATATTGGCCTAGATGATCCAATTCAACAAGCCAAACTCTTGTCTTCAATCATAGACCATTCTCGTCAAACTTCCCACTCTCAAGGTGCTGACATGTCAGCCATTCTACAAGGCTTAGCTGACAAAGCACCTCCTGGCATTAATGATGTTGCTGGCTGGTCAAAATTTGCTCAGTGTGCTCCTGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTGCAACCACAGCCGTCCTTGACAAATTTACTTGCTCAAGCTACTGATAATCCTACCTTAACTCCAGATAAGTTTCTTCCTTCTAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACCTATTGCAGTTGCATTCTCAAGTGCCTTTCTCTGCACAACAAATGTCATTGTTGGACAAACTTTTATTACTTAAGCAGCAGCAAAAACAAGAGGAGCAACAACAGTTATTACAGCAACAGCAGTTGCTCTCACAGGTTCTATCAGAGCATCAGTCACGACAGCATTTTATTGATCCATCTTTTGGACAGTTACAAGGTGCCCCTATACCTATTGGAAATGCATCTACTGATCCATCTCAAGTCCAGCAATCACGGGAGATGTTTCAGATTGGTTCACAGAAGCCTTTAAATGTTGTAACTGATCGTGCAACTCCCTTTGGAAATATGGCTTTGCAGGTTACCCAGGGAGCCAGTTACAATGTTAATTCAGAAGATCCATCGCTTGCTCTTCCACATCAAATGTTTGGAAATGTTGTTCAGCAGAAGAGTTGGACTCCTGCTCTCTCTGAGCAGCTTAATGATACTCGTCCCAAAGATATGTTACCTGGATCTAAAGTTGGTGAGGGCTCACTTTTTCCTGGGCTCAGCAAATCAAATGAGGATGTGAATCTTGTACCAATGTCATCTGATAGCCACACTGTTAAAGCTTTGGAGCAGATAGCAGAGGATGTACCAAGGCTGGATGCAACTGTCACATCTCTTGCATCTGATGCTATGGTAGAACCTCTTCCTCTCAAGGCTACTGAAATCTCAGTTGCTATACAACCAACAGAAGTTCATGATATTGAAATTTCCATGCCCGATAGTGCAGCTGTTTTGAAGGTTCAAGAAGCTAGTATGCCTGTGGAAAAACTCGAAAGGGGCATATGCAAAGACGAGACCTCCTTGGAGACAGAACTGAAAAATGTTGAAGTACAAGAACCTAAAAAATCTTCTGATAAAAAGACCAAGAAGCATAAATCTTCGAAGTTGCTTTCCTCAGACCAGGCCAAGGACTCTAAGAATTCTGCTATTCAGCAGTTAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGGCAGATAATATTGTGGGAAAATCAAGTGATACAGCTTCCTCTCCTCGGAAGATTAAAGATGGAGATGGCAAAATTACTGTTGTGGATAGTCAGCCAGTTCAAAGCTCTGCCTCTGCTATAAATACCTGGAACGATGGTGAAACTGTTCAAGTGAAGGATGATGCCAGACTAGTTGGGTCCGATTCTGTGCTTAACTCACAAACTCAATCTGGCCAAAGAGCTTGGAAAGTTGCTTCGAGTTTCAAGCCAAAGTCATTATTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATACAGAAACTGCTGTATTAGACATTTCCACTTCTATCAGCTCTATTAGTTTATCAACTCCTTGGGCTGGGATCGTGAGCAGTTCAGATCCTAAAGCTTCCAAAGAAATTCATAAAGATTCTGTGATTTCAGAATCAAGTGAGAAACACGAAAATTTATCGACTTCAAGGAGTAGAAAGAGCCAATTGCATGATCTGTTGACAGAAGACGATACTGAAAAGTTTTTTGACTCTGTACAGATTGCTTCTTCTCCTCATGTCATGGCCACACAAGCAGAACCCATGGATGACAATTTTATTGAGGCAAAGGACACCAAAAAGAGCCGCAAGAAGTCTGCTAAGGCCAAGGGCGTTGGTACCAAGGCCTCCTCTGCAGTCCCTTCTGCTGATGTGCCTGTTGGTTCAAGTCCCATTGAGAAAGGGAAAATCTCCCGCCAGACCCAGCAGGAGAAGGAAGCAATGCCTGCTATTCCTTCTGGACCTTCTTTGGGTGATTTTGTTATGTGGAGGGGAGAAGCTGCTAACGTGGCCCCTGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTTCCCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGGAAGAAAAACCTCTGCTGCTCAGCATTCTCATCAAATCCCTACTCCCCAAAAGGCTCAGCCTACTCAGGTTGGTCGTAGCAGCAGCACTAGTACTCCTTCCTGGGCTCTCTCTGCATCTTCTCCATCGAAGGCTGCATCATCCCCCCTTCAGAATAATCCTACTCAGTCAAAACATGGAGGCGATGATGACTTATTTTGGGGCCCCATTGAGTCAAAGCAAGAAAATCAGCAGGTTGATGTCCGTCTTGGGAGCCACGGCAGCTGGGGAAATAGGAACACCCCTGCAAAAGCAGTAGCTTCGACTGGGTTGTTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACTATCTTTCATCCTCGCCTGCACAGTCATCTCAGAAAGGCAAACAAGATCCAGTTACCAAGCATTCAGAAGCTATGGGCTTCCGCGATTGGTGTGAGAGTGAATGTGTAAGGCTCATTGGGACAAAAGACACAAGTTTCCTGGAATTCTGCTTGAAGCAATCGAGATCCGAGGCAGAGCTGCTTTTGATAGAGAACCTTGGATCATATGATCCTGACCATGACTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAGTCGCAATGATAGGAAGGTATCTGCTATAGCTTCCCGAGAAGTAAATTCTGGCAATGCTGGTGGGGATGTGGACCCTGATGTCCCTGTTGGCCGTGATGGGTCCGCAAAGAGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTTAGTCCATCGGTTTTGGGTTTCAATGTAGTTAGTAACCGAATCATGATGGATGGGAATTCATTGGCATTTCACAGTGAAGTTTTATCTCATGCAATGCTGGCCCCAAGACCTATCAACGACTGCAAAGATGAGTGCATCAGTGCTGCCCTGAGCCAATCCCTGATGGCTGCTGATGAGACAGGACTTTAA 5637 44.35 MAGRFDFGSRSNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGTGENHFSHQPAYGNRMDTMKGSENYEDTNDIQKKKEVFRPSLTDSEIGRRDRWHDEERENNSSMRKDRWRDGEKEMGDSRKMDRWNEDSSSRVFRESRRGPAERWSDSNNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSLQGRGKGDPPHHQTQTPIKQVPAFAHRGRADNTPPTFSLGRGIISSGVNPTNNVYTPPNYVGASSEKSAREPFYYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVATLTLDEPLEPLALCAPTTEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQTRRTKLGVSPSLGSREDLPHGFDDYNDDKDDATTKPGHTNHSEVSTERQMPYHRPQSKIEAIQEHMAHNSSTFKSEAFREDDNAMRKTDEVAVNRESSVKGGTNVHPGSTWDASSLEQPLNTSLPDWRENSNNISSGTPDKGWLQSSKNLNDGWGSNSATPSYPKDNPKWQTGEESIIRRQLSGILDKEQVARKTVQSAPEDLQLHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRPVNAPNDLPFAALGDVMPHLRSKAKPPPGFSGPKQNEFADSLGNASYGSLGKLHTALNEIDTMRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGVPGYFGNNSNSLPSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDATSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHSQGADMSAILQGLADKAPPGINDVAGWSKFAQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPSLTNLLAQATDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHFIDPSFGQLQGAPIPIGNASTDPSQVQQSREMFQIGSQKPLNVVTDRATPFGNMALQVTQGASYNVNSEDPSLALPHQMFGNVVQQKSWTPALSEQLNDTRPKDMLPGSKVGEGSLFPGLSKSNEDVNLVPMSSDSHTVKALEQIAEDVPRLDATVTSLASDAMVEPLPLKATEISVAIQPTEVHDIEISMPDSAAVLKVQEASMPVEKLERGICKDETSLETELKNVEVQEPKKSSDKKTKKHKSSKLLSSDQAKDSKNSAIQQLKQSKSGKSENDLKLKADNIVGKSSDTASSPRKIKDGDGKITVVDSQPVQSSASAINTWNDGETVQVKDDARLVGSDSVLNSQTQSGQRAWKVASSFKPKSLLEIQEEEQKRAHTETAVLDISTSISSISLSTPWAGIVSSSDPKASKEIHKDSVISESSEKHENLSTSRSRKSQLHDLLTEDDTEKFFDSVQIASSPHVMATQAEPMDDNFIEAKDTKKSRKKSAKAKGVGTKASSAVPSADVPVGSSPIEKGKISRQTQQEKEAMPAIPSGPSLGDFVMWRGEAANVAPAPAWSSDSGKVPKPTSLRDIQKEQGRKTSAAQHSHQIPTPQKAQPTQVGRSSSTSTPSWALSASSPSKAASSPLQNNPTQSKHGGDDDLFWGPIESKQENQQVDVRLGSHGSWGNRNTPAKAVASTGLLSRQKSSGGKADYLSSSPAQSSQKGKQDPVTKHSEAMGFRDWCESECVRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHDFIDQFLNYKELLPADVLEIAFQSRNDRKVSAIASREVNSGNAGGDVDPDVPVGRDGSAKSGGKKKGKKGKKVSPSVLGFNVVSNRIMMDGNSLAFHSEVLSHAMLAPRPINDCKDECISAALSQSLMAADETGL 1878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28376703 28386147 + CcPI632755_08g017000.1 Cco08g1700 186174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1700 1878 MobiDBLite consensus disorder prediction 484 558 - -
Cco08g1700 1878 Gene3D - 578 659 IPR035445 -
Cco08g1700 1878 Pfam GYF domain 594 631 IPR003169 GO:0005515(InterPro)
Cco08g1700 1878 MobiDBLite consensus disorder prediction 71 226 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1200 1303 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1384 1415 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1283 1303 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1 247 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 485 558 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 9 33 - -
Cco08g1700 1878 CDD GYF 590 647 IPR003169 GO:0005515(InterPro)
Cco08g1700 1878 MobiDBLite consensus disorder prediction 426 440 - -
Cco08g1700 1878 SUPERFAMILY GYF domain 582 647 IPR035445 -
Cco08g1700 1878 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1832 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1782 1816 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1374 1415 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1657 1691 - -
Cco08g1700 1878 ProSiteProfiles GYF domain profile. 590 641 IPR003169 GO:0005515(InterPro)
Cco08g1700 1878 MobiDBLite consensus disorder prediction 371 441 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1657 1685 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1227 1245 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1438 1622 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 375 396 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 405 425 - -
Cco08g1700 1878 MobiDBLite consensus disorder prediction 1560 1613 - -
Cco08g1700 1878 Coils Coil 948 968 - -
Cco08g1700 1878 SMART gyf_5 591 646 IPR003169 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1700 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0191 Cco-Chr6:2001097 Cco08g1700 Cco-Chr8:28376703 7.20E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44