Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1706 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCAACTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGCGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGTCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTGCTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGTGACAAGCTTAACCTCGGCTGTGGCCTCCAACGTCAACAAAACCAGCCCAACAAACGGCGGTGGTACAAGCGCTTTCGTGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACTTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCTCCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAATGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGGGGCGGGGGGAATAATGGGCTATGA 1380 55.36 MVSAENNSQSAKVVATSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALSFASSDSNVMATAAAAGVAVASSALATVPLSPALSIQSSEAPDIPMGPPPLTPAVTSLTSAVASNVNKTSPTNGGGTSAFVGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28416846 28419695 + CcPI632755_08g017060.1 Cco08g1706 186180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1706 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cco08g1706 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cco08g1706 459 Gene3D Classic Zinc Finger 117 193 - -
Cco08g1706 459 MobiDBLite consensus disorder prediction 281 308 - -
Cco08g1706 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cco08g1706 459 FunFam protein indeterminate-domain 12-like 41 109 - -
Cco08g1706 459 SMART c2h2final6 138 158 IPR013087 -
Cco08g1706 459 SMART c2h2final6 62 84 IPR013087 -
Cco08g1706 459 SMART c2h2final6 103 133 IPR013087 -
Cco08g1706 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cco08g1706 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 194 - -
Cco08g1706 459 MobiDBLite consensus disorder prediction 292 308 - -
Cco08g1706 459 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Cco08g1706 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 377 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco08g1706 459 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Cco08g1706 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Cco08g1706 459 Gene3D Classic Zinc Finger 62 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1868 Cco-Chr1:31219516 Cco08g1706 Cco-Chr8:28416846 3.70E-59 dispersed
Cco07g0970 Cco-Chr7:22498656 Cco08g1706 Cco-Chr8:28416846 4.30E-89 dispersed
Cco08g1706 Cco-Chr8:28416846 Cco09g0587 Cco-Chr9:5188438 3.50E-81 dispersed
Cco01g1629 Cco-Chr1:28999151 Cco08g1706 Cco-Chr8:28416846 2.30E-60 transposed
Cco04g1699 Cco-Chr4:32146844 Cco08g1706 Cco-Chr8:28416846 1.20E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59837 PF12874 zf-met 0.0032 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1706 K25869 - csv:101217471 720.694