Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1707 ATGCACGTGGTGGGAAGAGAAGATCTGAATTTCATTTTACCAATTTTTTCCCCTCCTTCAATTGATAACTGTTACTGTTCAATTCCAAAATCGAAGAATCTGCAGCAGTTCCAATCAGCTCCTGCCAGCTTGTTTAAGTTTTCTTACCCTTTGCTGCACTTCTTTATTCTATTGAGTACTCAAACAGACCTACAATTCTGCAGACTCAATGAACTTGTAAGTTTTTGGGCATCCTATCGCGTTCATGGCATGATGATTAAGATTGCAGAGGGGCATCAACTGAATTCAGGTTTTTTCATTGTCAACAAAATGAAAATTAAGCTTGGATCCAAGAAATGGAAATCAATTGCCCCTCATTTGAAAGGAAAATCACCATCTCCCTCTTTTTGTCTATTTTCCAAATCTAAGTCAGTTAACTATGGTCCAGGCAAAACACCAGTTTATCTAAACGTGTACGATTTAACCCCTATGAATGGTTATGTCTATTGGGCAGGCCTTGGTATCTTTCATTCTGGTGTAGAAGTCCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCGACCAGTGGCGTTTTTGAAGTCGAGCCTCGACAATGCCCGGGCTTCAAGTTCAGGAGGTCAATATTGATTGGCACAACCTGCCTTGATCCTCATGAAGTCAGAGAGTTCATGGAACAACGCTCTTCAAGCTACTACGGGGATACATATCACCTAATTGTCAAGAACTGCAATCATTTCTGCAGGGACGTCTGTCATCAGTTGACTGGAAAATCAATTCCAAAATGGGTAAATCGACTGGCTAAAATAGGTTCCGTTTGTAGTTGCATACTTCCTGAATCCCTTAGAATATCTGCCATAAGACACGACCCCACATACCCGCCATACGAGACTGAGAAGACGAAGCTGAGGAATGCCTTCAATTGCTTGTCTTCTATATCATCGCGGCAGAAGCAGCTATCTTCAACTTCATTATTTCTACAGTCACCATTGAAAGGCTGGGAGTTGAAAAAATCCAACAGTGAACCCTCATGCCTCAAAGGATAG 1047 41.45 MHVVGREDLNFILPIFSPPSIDNCYCSIPKSKNLQQFQSAPASLFKFSYPLLHFFILLSTQTDLQFCRLNELVSFWASYRVHGMMIKIAEGHQLNSGFFIVNKMKIKLGSKKWKSIAPHLKGKSPSPSFCLFSKSKSVNYGPGKTPVYLNVYDLTPMNGYVYWAGLGIFHSGVEVHGVEYAFGAHDYSTSGVFEVEPRQCPGFKFRRSILIGTTCLDPHEVREFMEQRSSSYYGDTYHLIVKNCNHFCRDVCHQLTGKSIPKWVNRLAKIGSVCSCILPESLRISAIRHDPTYPPYETEKTKLRNAFNCLSSISSRQKQLSSTSLFLQSPLKGWELKKSNSEPSCLKG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28424821 28428545 + CcPI632755_08g017070.1 Cco08g1707 186181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1707 348 ProSiteProfiles PPPDE domain profile. 145 282 IPR008580 GO:0008233(InterPro)
Cco08g1707 348 Pfam PPPDE putative peptidase domain 146 280 IPR008580 GO:0008233(InterPro)
Cco08g1707 348 Gene3D PPPDE domains 141 288 IPR042266 -
Cco08g1707 348 SMART DUF862_2a 145 283 IPR008580 GO:0008233(InterPro)
Cco08g1707 348 PANTHER DESUMOYLATING ISOPEPTIDASE 143 304 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1707 K22763 - - csv:101219130 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1295 Cco-Chr7:27028586 Cco08g1707 Cco-Chr8:28424821 5.50E-54 dispersed
Cco08g1534 Cco-Chr8:27000329 Cco08g1707 Cco-Chr8:28424821 1.00E-60 dispersed
Cco08g1707 Cco-Chr8:28424821 Cco09g1988 Cco-Chr9:34102820 1.10E-87 dispersed
Cco01g0463 Cco-Chr1:4533443 Cco08g1707 Cco-Chr8:28424821 5.80E-61 transposed
Cco06g1254 Cco-Chr6:22582717 Cco08g1707 Cco-Chr8:28424821 3.30E-53 transposed
Cco02g0582 Cco-Chr2:5638222 Cco08g1707 Cco-Chr8:28424821 1.30E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g904 . . . . . . . . . . . . . Car12g00456 Sed04g3587 . Cpe07g00435 Bhi04g00266 Tan02g0834 Cmetu01g1929 . Hepe02g0532 . Lcy13g2001 Cla08g01507 Cam08g1995 Cec08g1570 Cco08g1707 Clacu08g1685 . Cre08g1468 Cone4ag1896 Cone7ag1808 Cone17ag1325 Cone20ag0151 . . . Cme03g01972 Blo17g00810 Blo18g00822 Bda08g01294 Bda01g01488 Bpe02g01684 Bpe05g00082 Bma01g00768 . . . . Cma12g00485 . . . . . . . . . . . . . . . . . . . Lsi08g01411 Csa02g02035 Chy03g01478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103