Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1711 ATGCGGGCCCCAAAGTCAAAGGATAAAGACAATGAAACCGTAGTCGTCGTCGTCTTCTTCTTTATCTTCTTTTCCCACTCTGAAATTCTCCATTTCTTCCGTCCACTTTATTACCCAAACCCCTTCGCCACTTCTTCCAATAATCCATACCCCCACTCCCCTTTTCCGCTTCCCGCCAGACTCACTCCCACCACGCCCATTCTCAAGGCGGATCGCCGGAAAATGACCTCCGACGGCGCCACTTCTGCCTCCACTTGCCGGCGGAAGCCGTCTTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGTCGGAGGAGAGCCATTGCCGCTAAGATTTACTCTGGCCTTAGGGCTCAGGGCAACTTCAATTTGCCTAAACACTGTGACAACAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGTTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCGCCCCCAATTGATATTGTTGGCACTTCAACCAAAATCACCCCTTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCCAGTCCTATGGGATCCTACCAAGTCAGTCCCTCCTCCTCCTCCTTCCCGAGCCCGTCCCGTCTCGATGCCAACAATCCGTCGAACCTCATTCCTTATCTTCGCCAAGCGATTCCCATATCGCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTAACCCCTCCCCTTTCATCCCCAGCCTCGAGGACTCCGCAGCCATTCCCCAATTGGGAAGTCACTGCTAAAGAATCCTTATCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCTCCAGCTAGCCCGACTCGACCTCAGCTCCATACTCCCGCCACGATCCACAAGTTCGACGAATCTGAATCATCCACCAATGAGTCCAGTCAATGGGCACTTCTCCGTGCCTATGCACCTTCTGCATCGACAATGCCAACATCTCCCACGTTCAACCTTGTGAAACCTGCTGACCAACATGCTCTACACGATGGCTTCATCAAAGAAAATGGAAGAGGAAACGAATTTGAGTTCTTGGGCTACAAGGTTAAGCCTTGGGAAGGGGAGAAGATTCATGATGTCGGATTGGAGGATTTAGAGCTCACACTCGGTAGCGGTAAGGCTCGAAGCTAA 1158 51.55 MRAPKSKDKDNETVVVVVFFFIFFSHSEILHFFRPLYYPNPFATSSNNPYPHSPFPLPARLTPTTPILKADRRKMTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMGSYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHKFDESESSTNESSQWALLRAYAPSASTMPTSPTFNLVKPADQHALHDGFIKENGRGNEFEFLGYKVKPWEGEKIHDVGLEDLELTLGSGKARS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28451073 28452591 - CcPI632755_08g017110.1 Cco08g1711 186185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1711 385 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 86 384 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cco08g1711 385 MobiDBLite consensus disorder prediction 169 206 - -
Cco08g1711 385 Pfam BES1/BZR1 plant transcription factor, N-terminal 87 210 IPR008540 -
Cco08g1711 385 MobiDBLite consensus disorder prediction 88 102 - -
Cco08g1711 385 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1090 Cco-Chr7:24443012 Cco08g1711 Cco-Chr8:28451073 1.90E-44 dispersed
Cco04g1688 Cco-Chr4:32057722 Cco08g1711 Cco-Chr8:28451073 1.20E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59838 PF05687 BES1_N 4.50E-62 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1711 K14503 - csv:101219853 533.487