Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1720 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCGCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAACAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCGTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 45.02 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28515573 28516265 + CcPI632755_08g017200.1 Cco08g1720 186194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1720 230 CDD RING-HC_AtRMA-like 28 72 - -
Cco08g1720 230 MobiDBLite consensus disorder prediction 1 20 - -
Cco08g1720 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 221 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cco08g1720 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cco08g1720 230 MobiDBLite consensus disorder prediction 84 122 - -
Cco08g1720 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Cco08g1720 230 SMART ring_2 30 70 IPR001841 -
Cco08g1720 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Cco08g1720 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cco08g1720 230 SUPERFAMILY RING/U-box 26 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0615 Cco-Chr3:6268168 Cco08g1720 Cco-Chr8:28515573 7.10E-25 dispersed
Cco08g1720 Cco-Chr8:28515573 Cco10g1744 Cco-Chr10:30984066 1.60E-26 dispersed
Cco04g1378 Cco-Chr4:29159777 Cco08g1720 Cco-Chr8:28515573 4.20E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1720 K10666 - csv:101221027 412.535