Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1720 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCGCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAACAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCGTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 45.02 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28515573 28516265 + CcPI632755_08g017200.1 Cco08g1720 186194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1720 230 CDD RING-HC_AtRMA-like 28 72 - -
Cco08g1720 230 MobiDBLite consensus disorder prediction 1 20 - -
Cco08g1720 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 221 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cco08g1720 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cco08g1720 230 MobiDBLite consensus disorder prediction 84 122 - -
Cco08g1720 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Cco08g1720 230 SMART ring_2 30 70 IPR001841 -
Cco08g1720 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Cco08g1720 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cco08g1720 230 SUPERFAMILY RING/U-box 26 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1720 K10666 - - csv:101221027 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0615 Cco-Chr3:6268168 Cco08g1720 Cco-Chr8:28515573 7.10E-25 dispersed
Cco08g1720 Cco-Chr8:28515573 Cco10g1744 Cco-Chr10:30984066 1.60E-26 dispersed
Cco04g1378 Cco-Chr4:29159777 Cco08g1720 Cco-Chr8:28515573 4.20E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g886 . . Bda01g00547 . Bpe02g00406 . Bma04g00198 Bma01g02302 Cmo05g00227 . . . . . Sed11g1002 . . Bhi04g00282 Tan02g1923 Cmetu03g0100 . Hepe10g0677 . Lcy13g2012 Cla08g01518 Cam08g2009 Cec08g1585 Cco08g1720 Clacu08g1698 . Cre08g1481 Cone4ag1888 Cone7ag1799 Cone17ag1319 Cone20ag0156 . . . Cme03g01984 . . . . . . . . . . . . Cma05g00220 Car05g00180 . Cpe11g00182 . . . . . . . . . . . . . . . Lsi08g01421 Csa02g02021 Chy03g01490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0586 . 77 566 C3H Transcription Factor Family AT2G31510 76.2 1.7e-227 785.4
Cco11g0927 . 25 283 C3H Transcription Factor Family AT2G31510 83.1 3.1e-123 439.1
Cco08g0586 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.1e-169 591.7
Cco11g0927 . 25 272 C3H Transcription Factor Family AT2G31770 58.1 1.6e-77 287.3
Cco08g0586 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.2e-167 584.3
Cco11g0927 . 25 257 C3H Transcription Factor Family AT2G31760 58.8 5.0e-76 282.3
Cco04g1262 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cco04g1262 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cco11g0509 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cco06g1241 . 68 372 C3H Transcription Factor Family AT1G11020 75.6 2.3e-135 478.8
Cco07g1542 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cco04g0291 . 153 513 C3H Transcription Factor Family AT5G08750 61.0 8.1e-121 430.6
Cco10g0882 . 26 456 C3H Transcription Factor Family AT3G16090 72.6 1.4e-168 589.7
Cco11g0509 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.4e-73 271.9
Cco08g1720 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cco04g1378 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 5.8e-69 257.7
Cco04g1671 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 2.0e-159 558.9
Cco08g1224 . 73 180 C3H Transcription Factor Family AT5G07040 67.6 3.1e-40 161.8
Cco06g1697 . 30 418 C3H Transcription Factor Family AT1G18470 75.8 5.8e-179 624.0
Cco01g0622 . 165 396 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cco08g0586 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.1e-169 591.7
Cco11g0927 . 25 272 C3H Transcription Factor Family AT2G31770 58.1 1.6e-77 287.3
Cco08g0586 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.2e-167 584.3
Cco11g0927 . 25 257 C3H Transcription Factor Family AT2G31760 58.8 5.0e-76 282.3
Cco07g0065 . 25 372 C3H Transcription Factor Family AT2G30580 50.9 5.8e-81 298.1
Cco09g2351 . 122 354 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cco04g0291 . 153 513 C3H Transcription Factor Family AT5G63780 57.2 1.8e-115 412.9
Cco10g1744 . 1 397 C3H Transcription Factor Family AT3G58030 50.7 8.8e-98 354.4
Cco09g2351 . 124 423 C3H Transcription Factor Family AT4G26580 63.0 7.0e-111 397.5
Cco04g0788 . 86 550 C3H Transcription Factor Family AT5G01960 68.9 2.3e-167 585.5
Cco07g0562 . 1 484 C3H Transcription Factor Family AT5G01960 57.9 1.1e-150 530.0
Cco02g1178 . 105 256 C3H Transcription Factor Family AT2G04240 59.5 5.2e-43 171.0
Cco02g0317 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 2.5e-37 152.1
Cco02g2442 . 1 192 C3H Transcription Factor Family AT5G19430 57.3 4.9e-56 214.9
Cco07g1193 . 130 585 C3H Transcription Factor Family AT5G45290 52.9 4.6e-104 375.6
Cco02g2442 . 40 204 C3H Transcription Factor Family AT5G12310 58.4 8.1e-51 197.6
Cco06g1587 . 171 461 C3H Transcription Factor Family AT5G05810 53.5 9.8e-75 277.7
Cco11g0657 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 3.1e-45 178.7
Cco04g0927 . 67 197 C3H Transcription Factor Family AT5G05830 60.4 3.0e-40 162.2
Cco06g1008 . 30 426 C3H Transcription Factor Family AT4G28890 51.0 9.7e-97 350.9
Cco11g0509 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cco11g0691 . 86 357 C3H Transcription Factor Family AT3G55530 80.2 5.0e-115 411.0
Cco09g0645 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 2.1e-116 415.6
Cco05g0324 . 10 392 C3H Transcription Factor Family AT2G44580 54.0 1.5e-120 429.9
Cco08g1720 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.1e-41 163.3
Cco05g1824 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.0e-111 397.9
Cco10g0882 . 144 444 C3H Transcription Factor Family AT1G65040 69.6 3.9e-111 398.3
Cco04g1378 . 41 251 C3H Transcription Factor Family AT2G23780 60.6 1.1e-72 270.0
Cco08g1720 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.9e-70 260.8
Cco01g0255 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.1e-45 179.9
Cco01g0687 . 18 353 C3H Transcription Factor Family AT1G68070 63.8 1.3e-117 419.9
Cco11g1944 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cco10g0011 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cco08g1449 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 5.9e-112 401.4
Cco10g0011 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.2e-39 157.9
Cco08g0586 . 77 566 C3H Transcription Factor Family AT2G31510 76.2 1.7e-227 785.4
Cco11g0927 . 25 283 C3H Transcription Factor Family AT2G31510 83.1 3.1e-123 439.1
Cco04g1262 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 3.9e-54 208.4
Cco10g1805 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cco04g0173 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 2.2e-151 531.9
Cco05g1060 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cco05g1061 . 684 941 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cco02g2532 . 139 428 C3H Transcription Factor Family AT2G41980 73.4 2.4e-126 448.7
Cco01g0811 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 2.7e-125 445.3
Cco06g0128 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cco05g2942 . 111 359 C3H Transcription Factor Family AT2G41980 79.1 1.2e-120 429.9
Cco05g0640 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cco10g2019 . 33 329 C3H Transcription Factor Family AT3G09770 58.9 7.9e-86 314.3
Cco06g1898 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 3.7e-127 451.4
Cco01g1455 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 8.7e-121 430.3
Cco11g1944 . 4 186 C3H Transcription Factor Family AT1G20823 55.7 2.5e-52 202.2
Cco10g0011 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cco09g1986 . 36 404 C3H Transcription Factor Family AT3G18930 54.4 3.1e-84 309.3
Cco10g0048 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 1.6e-74 276.2
Cco10g2064 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 1.4e-67 253.4
Cco06g1697 . 34 470 C3H Transcription Factor Family AT1G73950 68.5 6.6e-170 594.0
Cco08g0239 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 9.5e-39 157.5
Cco01g0687 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 1.2e-73 273.5
Cco10g0354 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.3e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79