Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1723 ATGGAGTGTGTGGTTCAGGGCATAATTGAGACCCAGCACGTTGAAGCTCTTGAGATTCTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAAAGATTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAGCCTAGGTGCTGTGGCTTCAGAGGTTCGGATCTTGTGCGACCTTGAGCAGGCTGAACCGACATGGACGGTTAAACATATTGGAGGGGCAATAAGAGGTGCAGGTGCTGAACAACTTTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTCTATTCTATGCACTTGGCTATAAGTTAGATCATGAGCTGCTGAGAGTTGGTTTTGCTTTCCGCTTTCACCGGGGTGCCCACATAACAGTGACGGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCAACTGATGAGGCTGTACCTGTTACACCTGGTATTCAGCTGGTCGAAGTGACAGCCGCAGCAACTTCTGATAACTATTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCGGGAATATCCACAGGTGTTGTTCCTACTGCTGCTGCAGCTGCAGCATCTCTTCTATCTGATGGTGCAGGAACAACAATGTTTGTATTACAATACGTTTACACCCTCTTCTTTGACTTTGAATTTCTGAGAAATCAACTTCTCAACCGATCTTTGCGTGTCTGCTTTGCTGTGTTTCTATTTGCTGATGTCTTGCTTCTAATGTTCTTCAAGCATGTTAGACATTGGTCTTTCCTTATGCTGTTTAAGGTAAATTTTTTCATTGATCATGGGCAGATAAGACTAAACACCATGGGTTGGCTCAGCAAAATTTTAAAAGTTGGATCTGGCCATAGAATAACTGAAAAGAATTACCAAACAAACTATGAGGAGGATCCGAACTCTCATCTGCCCTCGACTTCAGAGGGTTTGTGGTCAGAGAACGAGAATGAAGACATTGATCGTGCAATAGCAATCTCTCTTGTAGAAGAAAGTCAGAAGGCAAATAATGTGATTGATCGTGATTATCAATTGGAAGAAGATGAACTTCTTGCCAAAGCAGTACAAGAAAGCCTCAATTTGGAATCTCCTCCACAACATACAAGTGGAAACATGTATCAACCTTATCTACCTCAATATCAATTTGGTTCCAGGATATGTGCTGGCTGCTATAATGAGATTGGCTATGGACGTTACTTGAACTGCCTCAATGCATTTTGGCATCCAGAATGTTTCCGTTGTCGTGCTTGCAACCTCCCAATTTCAGACTATGAGTTTTCTACTTCTGGGAATTTTCCATACCATAAATCTTGCTACAAAGAGAACTATCACCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACACCCTTTCTGGATCCAGAAATACTGCCCGTCTCATGAATACGATGGCACTCCTCGATGTTGCAGTTGCGAACGAATGGAGCCTCGAGAGGTTAAGTATATTCCACTTCATGATGGTCGAAAGCTTTGCCTCGAGTGTCTCGACTCTACAATCATGGACACAAAAGAATGCCAACCCCTTTATCGTGATATACAGGAATTTTATGATGGTTTGAATATGAAAGTAGAGCAGGAAGTTCCATTGCTTTTGGTCGAAAGGCAAGCACTAAACGAAGCAAGAGAAGGAGAAAAACATGGCCATTATCATATCCCCGAGACAAGAGGACTGTGTCTTTCGGAGGAACAAACCATTAGCACTGTTTTAAGGCGACCTAGATATGAAAGGGGAAATCGAGTATCGAGCACGATGTCTGAGCCCTACAAATTAACACGTCATTGTGAGGTCACAGCAATTCTCATTCTGTTTGGTCTTCCTAGGTTGCTGACCGGGTCAATTTTAGCTCATGAGATGATGCACGCATGGCTGCGCCTTAAAGGTTTTCGAACTCTCAGTCAAGACGTTGAAGAAGGTATCTGTCAAGTTCTAGCACACATGTGGTTGAGTACTGAGCTCATGTCTTGCCAAGACTACAACGATGTCGCCTCGACCTCGTACTCCGCTGCTCCCACAGCATCATCAAGAAGAAAAAGAATGTCTAAATTTGAGAGAAAACTTGGGGAGTTCTTTAAACACCAGATTGAGTCGGACATGTCTCCAGTGTATGGAGATGGATTCAGGGCTGGGCAGATGGCTGTGCATAAATACGGTCTTCGGAGTACACTCGATCATATTCAAATGACTGGGACCTTTCCTTATTGA 2304 43.23 MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQAEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAAATSDNYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTMFVLQYVYTLFFDFEFLRNQLLNRSLRVCFAVFLFADVLLLMFFKHVRHWSFLMLFKVNFFIDHGQIRLNTMGWLSKILKVGSGHRITEKNYQTNYEEDPNSHLPSTSEGLWSENENEDIDRAIAISLVEESQKANNVIDRDYQLEEDELLAKAVQESLNLESPPQHTSGNMYQPYLPQYQFGSRICAGCYNEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNFPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEYDGTPRCCSCERMEPREVKYIPLHDGRKLCLECLDSTIMDTKECQPLYRDIQEFYDGLNMKVEQEVPLLLVERQALNEAREGEKHGHYHIPETRGLCLSEEQTISTVLRRPRYERGNRVSSTMSEPYKLTRHCEVTAILILFGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLSTELMSCQDYNDVASTSYSAAPTASSRRKRMSKFERKLGEFFKHQIESDMSPVYGDGFRAGQMAVHKYGLRSTLDHIQMTGTFPY 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28530063 28539135 - CcPI632755_08g017230.1 Cco08g1723 186197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1723 767 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 331 350 IPR003903 -
Cco08g1723 767 ProSiteProfiles LIM domain profile. 401 461 IPR001781 -
Cco08g1723 767 SMART lim_4 402 454 IPR001781 -
Cco08g1723 767 SMART uim 362 381 IPR003903 -
Cco08g1723 767 SMART uim 331 350 IPR003903 -
Cco08g1723 767 ProSitePatterns LIM zinc-binding domain signature. 403 437 IPR001781 -
Cco08g1723 767 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 429 483 - -
Cco08g1723 767 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 396 428 - -
Cco08g1723 767 Gene3D - 1 190 - -
Cco08g1723 767 CDD LIM_DA1 403 455 - -
Cco08g1723 767 FunFam Protein DA1-related 1 397 456 - -
Cco08g1723 767 Pfam Protein DA1 552 762 IPR022087 -
Cco08g1723 767 Gene3D Cysteine Rich Protein 396 476 - -
Cco08g1723 767 Pfam LIM domain 403 458 IPR001781 -
Cco08g1723 767 PANTHER PROTEIN DA1-RELATED 2 288 767 IPR045218 GO:0043130(PANTHER)
Cco08g1723 767 FunFam Mediator of RNA polymerase II transcription subunit 18 1 190 - -
Cco08g1723 767 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 362 381 IPR003903 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1723 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1383 Cco-Chr2:26046922 Cco08g1723 Cco-Chr8:28530063 6.70E-171 transposed
Cco07g0358 Cco-Chr7:3849663 Cco08g1723 Cco-Chr8:28530063 1.90E-144 transposed
Cco02g0591 Cco-Chr2:5739899 Cco08g1723 Cco-Chr8:28530063 7.00E-26 wgd
Cco04g1383 Cco-Chr4:29197692 Cco08g1723 Cco-Chr8:28530063 2.10E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59839 PF12315 DA1-like 2.80E-95 CL0126 Cco TR