Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1727 ATGGTTCAGACCAAATTTGAATCCCCCGATTGCTCTCTTAATCGCTCTAGCATAAGCTGCTACACCCAGAACGGAACCGCTTCCGCCGGTTTCTTGGACTTCAAAAACCTCACCGGAACCCATTGCGATTACCTTCTGTCGTCGATTTCCGCGGAGGCGCTCAATAGCAACGCCTCTGCCGGAATTTCTCTGGAAATTCAGACGGTGGATCTTGGGTGGTGGCTGCAGGGGGCTTGCGACCAGTCCTGCCATGAAGATGCTAACTGCACGGAGCTTAAATCGCCGAGTAATGGGATGTTGTCTCATCGTTGCCGCTGCCGGGAAGGATTGGTCGGCGATGGGTATTTGGCCGGCACCGGCTGCCGGAAAGCTTCAAATTGCTACTCTACCAAGAACATTATCGGCGAATGCGGAACATCAACAACAGCCACAAGAACCGCCATCCTCATCGGAACCGTAATCGGCGGCGCCGCCGTACTACTTTCTCTCGGTTTATTCTGCTGCTTCATCCGCCGTCGTTCCAATCTCAAATCTATACACCTCAACAAAATCACCAAACGCCGCCTCACGGAAGCTACCGCCGGCGCCGGCAAATCCACCATCCACCTCTACACCTACAAAGAGATCCAAAAGGCCACCCACAACTTCTCCGACGATCACCGCCTCGGCACCGGCGCATACGCCACCGTCTACGCCGGAAAATTACGCAACGGCGAATGGGTTGCCATCAAACGCCTCAAAAATCGAGATCCCGACACCATCCAACAAGTCCTCAACGAAATCAACCTCATCTCCTCCGTCAGCCACCCTAACCTCGTCCGCCTCCTCGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTCTCAGCATTTACAGAAACAGAGAGGCACCGGCCTCCCCTGGCTCGTCCGCCTCGACATCGCCGTCGAAACCGCTAACGCAATCGCCCACCTACATTCTGCAATTAACCCCCCGATCTTCCACAGAGATATCAAATCCAGCAACATACTGCTCGATCAGAATCTCAAATCGAAAGTAGCGGATTTCGGGCTTTCAAGATTGGGGATGGCCGAAATTTCGCACATCTCGACGGCCCCTCAAGGGACACCGGGGTATCTCGATCCGCAATACCATCAAGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTGGTCCTCGTTGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTAAATTTGGCAACTCTGGCCGCCGATAGGATCGGGAATGGGCGGCTGAGTGAAATTGTGGACCCGTTGATGGAGATGGAGGGCGATGAATGGGGAATTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCTTGGCGTTTGATAGGGATGTGAGGCCGTCGATGGTGGAGGTGGCGGCGGAGCTGGAAGAGATCCGCCGGAGCAGGTGGGACGAAAGGGGATTGAAGTGTAAGGAAATGGAATCAGTAGTTGAAAGTGGGAGCTCCAAGTCTAGCCATGGAGGTGGGGATTACTTTTCAAGAGGCTCTGTTGAAGATTCATGGCGGAGTGAACAGAGCTCGCCGTCGTCCAGTAGTTTGCTAAATAATGTCCTTTTATGA 1659 53.95 MVQTKFESPDCSLNRSSISCYTQNGTASAGFLDFKNLTGTHCDYLLSSISAEALNSNASAGISLEIQTVDLGWWLQGACDQSCHEDANCTELKSPSNGMLSHRCRCREGLVGDGYLAGTGCRKASNCYSTKNIIGECGTSTTATRTAILIGTVIGGAAVLLSLGLFCCFIRRRSNLKSIHLNKITKRRLTEATAGAGKSTIHLYTYKEIQKATHNFSDDHRLGTGAYATVYAGKLRNGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWLVRLDIAVETANAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLATLAADRIGNGRLSEIVDPLMEMEGDEWGISSVEKVGEVAFRCLAFDRDVRPSMVEVAAELEEIRRSRWDERGLKCKEMESVVESGSSKSSHGGGDYFSRGSVEDSWRSEQSSPSSSSLLNNVLL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28567219 28574125 - CcPI632755_08g017270.1 Cco08g1727 186201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1727 552 ProSiteProfiles Protein kinase domain profile. 216 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1727 552 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 539 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cco08g1727 552 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524(InterPro)
Cco08g1727 552 CDD STKc_IRAK 222 491 - -
Cco08g1727 552 Gene3D Transferase(Phosphotransferase) domain 1 292 515 - -
Cco08g1727 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1727 552 Gene3D Laminin 80 116 - -
Cco08g1727 552 SUPERFAMILY Protein kinase-like (PK-like) 199 489 IPR011009 -
Cco08g1727 552 MobiDBLite consensus disorder prediction 508 552 - -
Cco08g1727 552 FunFam Wall-associated receptor kinase-like 20 292 500 - -
Cco08g1727 552 MobiDBLite consensus disorder prediction 531 552 - -
Cco08g1727 552 CDD TM_EGFR-like 145 177 - -
Cco08g1727 552 Gene3D Phosphorylase Kinase; domain 1 185 291 - -
Cco08g1727 552 Pfam Protein kinase domain 218 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1727 552 SMART serkin_6 216 497 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1553 Cco-Chr7:29574370 Cco08g1727 Cco-Chr8:28567219 1.90E-83 dispersed
Cco08g1727 Cco-Chr8:28567219 Cco11g0678 Cco-Chr11:7388175 1.80E-79 dispersed
Cco04g1395 Cco-Chr4:29317503 Cco08g1727 Cco-Chr8:28567219 3.40E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87055 PF00069 Pkinase 7.70E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1727 - - - 0.0