Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1730 ATGAAATTTGGGAATTTCTTGACGATTAATTCCGATCTGAAAATCGACGACGACGGTGATTTTCCGACGCCGAATAGCGACGAGTCTCCGCCGAGATTTTCGCCGTGGAATCAAACTTATCCCTTTTTGAAATCTCCCTGTTTTTCCGAATTCCAAAACGGCGCTGCTCATCCCCGGAATAATAATAGTAATTCTCTCATTGGGTCTCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTAGCAACTGCCGGCGAACTTCTCTACACCGGCTCCGACAGCAAAAACATTCGAGTATGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCGAGCAGTGGATTGGTTAAGGCAATTATAATCTCCGGCGAAAAAATCTTCACCGGTCACCAGGACGGCAAAATTCGGATCTGGAAAGTTGCTGTGAAAAACCCAAGCGGCGGTCACCGGCGGGCTGGGACGTTGCCGGCTATGAGAGATGTAGTAAGAAGCTCGATGAACCCTCAAAACTACGTCGTTGTCGGACGGAACCGGAGCCGGCTTTGGTTTAAGCATAGCGATGCGGTTTCGTGCTTGTGCTTGAGTGAAGATAGGACTTTATTGTATTCCTCTTCTTGGGATAAAACTTTGAAAGTATGGAGAATTTCAGATTCCAAGTGCCTCGAATCACTTACTGTTCACGACGACGCCGTCAATGCCGTCGTCGCGGCCTCCGATGGCTTGGTCATTACTGGCTCGGCTGACGGCACCGCCAAGGTATGGCGGAGACAGCATGAAGAAGAGCACGACGCAACCAAACACATACTGGAGCAAACGCTGCTGAAGCAAGACAGTGCAGTGACGGCGGTGGCCGTCAACGCCGCCGGCACGGTGGTGTACTGTGGATCCTCCGACGGGCTGGTCAACTTCTGGGAGCGAGAAAAGCGGTTGACTTACGGTGGAGCTCTCAAGGGCCACAACTTAGCAGTTCTCTGCCTCGCGGCGGCCGGAAGCTGCATGGTACTAAGCGGCGCCGCCGATAAAACCATATGCGTGTGGCGGAGGGATGGGCCTTTCCACACGTGCGTATCGGTTCTGACGGGTCACACCGGACCTGTTAAATGTTTGGCCGTCGAGGAAGATCGTCGCCTCGGCAGTCGGCGGTGGATTGCGTACAGTGGTAGCCTGGACAGATCGGTGAAGGTGTGGGAGGTTTCCGACGGCCTTGGTGGCTGA 1212 52.81 MKFGNFLTINSDLKIDDDGDFPTPNSDESPPRFSPWNQTYPFLKSPCFSEFQNGAAHPRNNNSNSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTGHQDGKIRIWKVAVKNPSGGHRRAGTLPAMRDVVRSSMNPQNYVVVGRNRSRLWFKHSDAVSCLCLSEDRTLLYSSSWDKTLKVWRISDSKCLESLTVHDDAVNAVVAASDGLVITGSADGTAKVWRRQHEEEHDATKHILEQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKRLTYGGALKGHNLAVLCLAAAGSCMVLSGAADKTICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRRLGSRRWIAYSGSLDRSVKVWEVSDGLGG 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28584830 28586792 + CcPI632755_08g017300.1 Cco08g1730 186204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 253 - -
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 400 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Gene3D - 174 265 IPR015943 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 216 254 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 63 100 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 308 346 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 175 213 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 101 138 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 351 396 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 SMART WD40_4 265 304 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 403 - -
Cco08g1730 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 398 IPR045182 -
Cco08g1730 403 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Cco08g1730 403 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Cco08g1730 403 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 253 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Pfam WD domain, G-beta repeat 353 395 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Pfam WD domain, G-beta repeat 183 212 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Pfam WD domain, G-beta repeat 74 99 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Pfam WD domain, G-beta repeat 274 303 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 FunFam BnaA09g28200D protein 171 258 - -
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 Gene3D - 59 173 IPR015943 GO:0005515(InterPro)
Cco08g1730 403 SUPERFAMILY WD40 repeat-like 64 399 IPR036322 GO:0005515(InterPro)
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 345 IPR001680 GO:0005515(InterPro)
Cco08g1730 403 ProSitePatterns Trp-Asp (WD) repeats signature. 383 397 IPR019775 -
Cco08g1730 403 Gene3D - 266 402 IPR015943 GO:0005515(InterPro)
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Cco08g1730 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1730 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0790 Cco-Chr1:8334919 Cco08g1730 Cco-Chr8:28584830 1.00E-42 dispersed
Cco05g2872 Cco-Chr5:36333758 Cco08g1730 Cco-Chr8:28584830 4.70E-30 dispersed
Cco07g1394 Cco-Chr7:28010632 Cco08g1730 Cco-Chr8:28584830 1.50E-44 dispersed
Cco07g1395 Cco-Chr7:28021845 Cco08g1730 Cco-Chr8:28584830 3.00E-40 dispersed
Cco02g1407 Cco-Chr2:26287206 Cco08g1730 Cco-Chr8:28584830 1.10E-110 transposed
Cco02g0600 Cco-Chr2:5889563 Cco08g1730 Cco-Chr8:28584830 2.70E-108 wgd
Cco05g2184 Cco-Chr5:30648081 Cco08g1730 Cco-Chr8:28584830 1.60E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27