Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1731 | ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCAAATTGTGAGAACTCCAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA | 789 | 42.21 | MFSSTTHHSHWNNFIMDYTTTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28589460 | 28592476 | - | CcPI632755_08g017310.1 | Cco08g1731 | 186205 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1731 | 262 | Gene3D | - | 76 | 133 | - | - | |
Cco08g1731 | 262 | MobiDBLite | consensus disorder prediction | 200 | 219 | - | - | |
Cco08g1731 | 262 | Pfam | Myb-like DNA-binding domain | 78 | 129 | IPR001005 | - | |
Cco08g1731 | 262 | FunFam | Myb family transcription factor | 75 | 133 | - | - | |
Cco08g1731 | 262 | SUPERFAMILY | Homeodomain-like | 74 | 131 | IPR009057 | - | |
Cco08g1731 | 262 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 77 | 130 | IPR006447 | GO:0003677(InterPro) | |
Cco08g1731 | 262 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 46 | 242 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1731 | Cco-Chr8:28589460 | Cco09g1174 | Cco-Chr9:11466671 | 1.70E-32 | dispersed | |
Cco05g2205 | Cco-Chr5:30820185 | Cco08g1731 | Cco-Chr8:28589460 | 1.20E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59840 | PF00249 | Myb_DNA-binding | 9.90E-06 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1731 | - | - | - | 0.0 |