Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1731 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCAAATTGTGAGAACTCCAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 789 42.21 MFSSTTHHSHWNNFIMDYTTTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQEKDRHNGNANMKISSGVKKQNNNNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28589460 28592476 - CcPI632755_08g017310.1 Cco08g1731 186205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1731 262 Gene3D - 76 133 - -
Cco08g1731 262 MobiDBLite consensus disorder prediction 200 219 - -
Cco08g1731 262 Pfam Myb-like DNA-binding domain 78 129 IPR001005 -
Cco08g1731 262 FunFam Myb family transcription factor 75 133 - -
Cco08g1731 262 SUPERFAMILY Homeodomain-like 74 131 IPR009057 -
Cco08g1731 262 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 130 IPR006447 GO:0003677(InterPro)
Cco08g1731 262 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 46 242 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1731 Cco-Chr8:28589460 Cco09g1174 Cco-Chr9:11466671 1.70E-32 dispersed
Cco05g2205 Cco-Chr5:30820185 Cco08g1731 Cco-Chr8:28589460 1.20E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59840 PF00249 Myb_DNA-binding 9.90E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1731 - - - 0.0