Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1734 ATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCTTGTATTTTTGGATCGATCCATAATCCGGAGCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCCGATAGCCGGCGATTCAAGCCTGGTGACTCTGTCGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAAGGGTTGGGGAAAGCCCTAAGAATCCCATGGTTTTGGGTTTGATGTCGATGTTGAAATCGATGGCCGATTCTTCTGTGATCAGTACGGGGACTTTTGGGGTTTCTTCGTTTAAAGCCACTTCGATTATACCCTTTTTACAAGGATCGAAGTGGCTTCCGGGTTATGATATACGATCTCGTGTAAGCGACGATGTGGATAAAGGCGGAACAACGGTTTGTTATGATTATGATCTATGTGGGAGTAAACAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAGTACTTATTCCGAGGACGCAAAGGCCCTCTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCTTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTGTCCTACTCTGGAAGTAGGGGATCGTATTTTAGCAGAAAAGGTTTCGTACTTTTTCAGGAAACCTGAAGTTTCAGATATAGTGATCTTTAGGGCTCCTCAAATCTTGCAGGAATTTGGAGTTAGTTCAAATGAGGTGTTTATTAAGAGAGTCGTGGCTACATCTGGGGACGTGGTTGCAGTTCAAAAAGGGAAATTGGTGGTAAATGGTGTAGTTCAAGATGAGGACTTCGTCTTAGAGCCAATTGCTTATGAGATGGATCCATTGCTTGTGCCTGAAGGTTATGTGTATGTAATGGGGGACAACCGTAACAACAGTTGTGATTCTCATGACTGGGGTCCACTCCCAATAGAAAATATTGTAGGTAGATCATTATTCAAGTATTGGCCTCCCTCCAAGGGATCCGGTATGGTTGATGAATCACATGCAAGGAAGATTAATCTGGGTATTTCCTGA 1110 45.41 MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQEFWVRSCIFGSIHNPELKSAGSARNYRSDSRRFKPGDSVEKPTSMYSTLAGERVGESPKNPMVLGLMSMLKSMADSSVISTGTFGVSSFKATSIIPFLQGSKWLPGYDIRSRVSDDVDKGGTTVCYDYDLCGSKQFYENDFEKSSWVSRLLSTYSEDAKALFTALTVSVLFKSFLAEPKSIPSSSMCPTLEVGDRILAEKVSYFFRKPEVSDIVIFRAPQILQEFGVSSNEVFIKRVVATSGDVVAVQKGKLVVNGVVQDEDFVLEPIAYEMDPLLVPEGYVYVMGDNRNNSCDSHDWGPLPIENIVGRSLFKYWPPSKGSGMVDESHARKINLGIS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28622517 28625878 + CcPI632755_08g017340.1 Cco08g1734 186208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1734 369 SUPERFAMILY LexA/Signal peptidase 205 353 IPR036286 -
Cco08g1734 369 PANTHER SIGNAL PEPTIDASE I 1 352 IPR000223 GO:0004252(PANTHER)|GO:0005887(PANTHER)|GO:0006465(PANTHER)|GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)
Cco08g1734 369 NCBIfam signal peptidase I 191 348 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco08g1734 369 CDD S26_SPase_I 209 341 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cco08g1734 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 206 222 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco08g1734 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 309 328 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco08g1734 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 265 277 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cco08g1734 369 FunFam Peptidase/ serine-type peptidase 215 346 - -
Cco08g1734 369 Pfam Signal peptidase, peptidase S26 190 347 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cco08g1734 369 ProSitePatterns Signal peptidases I signature 3. 314 327 IPR019758 GO:0004252(InterPro)|GO:0016020(InterPro)
Cco08g1734 369 MobiDBLite consensus disorder prediction 51 75 - -
Cco08g1734 369 ProSitePatterns Signal peptidases I serine active site. 215 222 IPR019756 GO:0004252(InterPro)|GO:0016020(InterPro)
Cco08g1734 369 Gene3D Umud Fragment, subunit A 203 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1734 K03100 - - csv:101222362 662.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0961 Cco-Chr6:12938264 Cco08g1734 Cco-Chr8:28622517 1.40E-62 dispersed
Cco08g0733 Cco-Chr8:18912018 Cco08g1734 Cco-Chr8:28622517 5.80E-38 dispersed
Cco05g2214 Cco-Chr5:30875976 Cco08g1734 Cco-Chr8:28622517 8.20E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53