Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1740 | ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGTACCCAATTCTGAATTTTCCGTTGGACTACCGGAACCGCTCGTTCAACGGCGGCTCACCAGACAGAGGAAGCTCCGGCATCTTACGGATAGGGACGTTGGCTTTGAACACCCCCGATCATCTCCCGATTGCCCCGATTTTTCGGCAAAACCTAGATCGCCTCTAGGGGGTTCCGAACGTTGGTCCTCGTCGGCTTTGCCCCTGCCTTTGCCTCTTCCGGAGTTCTTTCCGGTTCAGAGCCCGGAGTCCGGTTCTTGGAATTCTGGCCAAGGGCGTGTTGGATCGCCTATTGGAACTCCGGTCCGAAATTCCGCTATTATTACTGTTAGGAAGAACTCTGATCGTGCAACAACGAATGTAAGTAAAAGTTTGGGCCACAATCAAAGGCGAGTTGCTATAGATTTGACCTTGGAAGTTAATAATGGCAATTCAGGAGGGGCCGGGGCTACCACATTTACAAGCCCTCAAAGCCTCTCTGTGAATCCGGAGAAATCGAATCCGAATAAGGAGTTTCTTTTTGGTTGTTCAGATCAGCTTCCAAACAACAAAGGCAGGGGTTCCCCTACTTATCCGAGTATTGAAAGGGGTAACTACAATTTGACACCTAAGAATTCGACGTCAAAGAGTGCGCCAACGAGCATTTTACCGAGTCCTGCTGTTAGCCCACGAAGAACACACACTGGAAATTTTTTTGTTTCTGGTTTGATTCACCATGAATATCAGGAATCTCCTTCTAATAGTTCTCCTAAAGTACCACCCCTTAAAACTGCACATAGTTCTCAACCTTCCCCTCTCCATAGCCCGACAGCTCGAGGTTCCATAAGCAATCCCAGATCTCCTAATGAAGTGACATTTCTCCCACATCCCAAGTTACAAAAAGATAGTAGTATAGATCGGTCTGAAAGCCATGGTCATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAGTAGCCTCTTCACAAGCATCTCCACAATCTCTTCCGTCAAATGTTCATCATGTTTTTGAGAAGCCATACATTTCATCTATGAAAGGTCAGTGGCAAAAAGGAAAGCGAATTGGGCGTGGTACGTTCGGAAGCGTTTATCTAGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATCTGCTGAATGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTCAGTCAGCTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGTGATCATTTCTATATATATTTGGAGTATGTTCATCCTGGTTCAATAAATAAATATGTTCGTGAACATTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATTCACAGAGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGAACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAATAATGCCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGTCTGAGTTTGAAGGGCATCAAGCTATGTTCAAGGTGTTGAATAAAACCCCGCCTACCCCAGAAAAGCTATCTCCTGAAGGGAAAGACTTCCTCCAGTGTTGTTTTCAGAGGAATCCAGCTGACAGACCAACAGCCTCGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCAAATGTTTCAATCCCCACGTCATCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCCAAGGACCCGCTTGATCCCAAAGGAGATCAGGCACAAAACTCTCCTGGAACTGCGGCTTCAAATGATCATTTGCTGTGCCGTAGTCCTTCAACGAACATTGCAAGCAATGTTCCTGCCAATGCTGTTACCAATCATCACTTTTCTATTTCAAGGACTCATAAAAGGGAAGTGCTGCACCTCTGA | 2136 | 44.66 | MPFFHKSASNSRLQQKVPNSEFSVGLPEPLVQRRLTRQRKLRHLTDRDVGFEHPRSSPDCPDFSAKPRSPLGGSERWSSSALPLPLPLPEFFPVQSPESGSWNSGQGRVGSPIGTPVRNSAIITVRKNSDRATTNVSKSLGHNQRRVAIDLTLEVNNGNSGGAGATTFTSPQSLSVNPEKSNPNKEFLFGCSDQLPNNKGRGSPTYPSIERGNYNLTPKNSTSKSAPTSILPSPAVSPRRTHTGNFFVSGLIHHEYQESPSNSSPKVPPLKTAHSSQPSPLHSPTARGSISNPRSPNEVTFLPHPKLQKDSSIDRSESHGHVNAHPLPLPPPLVASSQASPQSLPSNVHHVFEKPYISSMKGQWQKGKRIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQEIKVLSQLKHPNIVQYYGSEIIGDHFYIYLEYVHPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPNWMAPEVIKAAMLNNANPDLALAVDIWSLGCTIIEMLNGKPPWSEFEGHQAMFKVLNKTPPTPEKLSPEGKDFLQCCFQRNPADRPTASVLLDHPFLRSSNDSNVSIPTSSFSTMNLLEKLLSPKDPLDPKGDQAQNSPGTAASNDHLLCRSPSTNIASNVPANAVTNHHFSISRTHKREVLHL | 711 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28648494 | 28652889 | + | CcPI632755_08g017400.1 | Cco08g1740 | 186214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 162 | 182 | - | - | |
Cco08g1740 | 711 | SUPERFAMILY | Protein kinase-like (PK-like) | 341 | 654 | IPR011009 | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 196 | 242 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 256 | 298 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 256 | 346 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 649 | 687 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 661 | 687 | - | - | |
Cco08g1740 | 711 | Pfam | Protein kinase domain | 365 | 624 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1740 | 711 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 361 | 661 | - | - | |
Cco08g1740 | 711 | SMART | serkin_6 | 364 | 624 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1740 | 711 | ProSitePatterns | Protein kinases ATP-binding region signature. | 370 | 393 | IPR017441 | GO:0005524(InterPro) | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 97 | 116 | - | - | |
Cco08g1740 | 711 | Gene3D | Transferase(Phosphotransferase) domain 1 | 361 | 652 | - | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
Cco08g1740 | 711 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 33 | 629 | IPR050538 | - | |
Cco08g1740 | 711 | MobiDBLite | consensus disorder prediction | 162 | 242 | - | - | |
Cco08g1740 | 711 | ProSiteProfiles | Protein kinase domain profile. | 364 | 624 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0981 | Cco-Chr5:8613008 | Cco08g1740 | Cco-Chr8:28648494 | 8.10E-90 | dispersed | |
Cco06g0604 | Cco-Chr6:6570251 | Cco08g1740 | Cco-Chr8:28648494 | 2.40E-59 | dispersed | |
Cco08g1740 | Cco-Chr8:28648494 | Cco10g1179 | Cco-Chr10:24408409 | 6.50E-50 | dispersed | |
Cco04g1421 | Cco-Chr4:29627459 | Cco08g1740 | Cco-Chr8:28648494 | 9.30E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87056 | PF00069 | Pkinase | 9.40E-70 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1740 | - | - | - | 0.0 |