Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1740 ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGTACCCAATTCTGAATTTTCCGTTGGACTACCGGAACCGCTCGTTCAACGGCGGCTCACCAGACAGAGGAAGCTCCGGCATCTTACGGATAGGGACGTTGGCTTTGAACACCCCCGATCATCTCCCGATTGCCCCGATTTTTCGGCAAAACCTAGATCGCCTCTAGGGGGTTCCGAACGTTGGTCCTCGTCGGCTTTGCCCCTGCCTTTGCCTCTTCCGGAGTTCTTTCCGGTTCAGAGCCCGGAGTCCGGTTCTTGGAATTCTGGCCAAGGGCGTGTTGGATCGCCTATTGGAACTCCGGTCCGAAATTCCGCTATTATTACTGTTAGGAAGAACTCTGATCGTGCAACAACGAATGTAAGTAAAAGTTTGGGCCACAATCAAAGGCGAGTTGCTATAGATTTGACCTTGGAAGTTAATAATGGCAATTCAGGAGGGGCCGGGGCTACCACATTTACAAGCCCTCAAAGCCTCTCTGTGAATCCGGAGAAATCGAATCCGAATAAGGAGTTTCTTTTTGGTTGTTCAGATCAGCTTCCAAACAACAAAGGCAGGGGTTCCCCTACTTATCCGAGTATTGAAAGGGGTAACTACAATTTGACACCTAAGAATTCGACGTCAAAGAGTGCGCCAACGAGCATTTTACCGAGTCCTGCTGTTAGCCCACGAAGAACACACACTGGAAATTTTTTTGTTTCTGGTTTGATTCACCATGAATATCAGGAATCTCCTTCTAATAGTTCTCCTAAAGTACCACCCCTTAAAACTGCACATAGTTCTCAACCTTCCCCTCTCCATAGCCCGACAGCTCGAGGTTCCATAAGCAATCCCAGATCTCCTAATGAAGTGACATTTCTCCCACATCCCAAGTTACAAAAAGATAGTAGTATAGATCGGTCTGAAAGCCATGGTCATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAGTAGCCTCTTCACAAGCATCTCCACAATCTCTTCCGTCAAATGTTCATCATGTTTTTGAGAAGCCATACATTTCATCTATGAAAGGTCAGTGGCAAAAAGGAAAGCGAATTGGGCGTGGTACGTTCGGAAGCGTTTATCTAGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATCTGCTGAATGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTCAGTCAGCTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGTGATCATTTCTATATATATTTGGAGTATGTTCATCCTGGTTCAATAAATAAATATGTTCGTGAACATTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATTCACAGAGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGAACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAATAATGCCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGTCTGAGTTTGAAGGGCATCAAGCTATGTTCAAGGTGTTGAATAAAACCCCGCCTACCCCAGAAAAGCTATCTCCTGAAGGGAAAGACTTCCTCCAGTGTTGTTTTCAGAGGAATCCAGCTGACAGACCAACAGCCTCGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCAAATGTTTCAATCCCCACGTCATCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCCAAGGACCCGCTTGATCCCAAAGGAGATCAGGCACAAAACTCTCCTGGAACTGCGGCTTCAAATGATCATTTGCTGTGCCGTAGTCCTTCAACGAACATTGCAAGCAATGTTCCTGCCAATGCTGTTACCAATCATCACTTTTCTATTTCAAGGACTCATAAAAGGGAAGTGCTGCACCTCTGA 2136 44.66 MPFFHKSASNSRLQQKVPNSEFSVGLPEPLVQRRLTRQRKLRHLTDRDVGFEHPRSSPDCPDFSAKPRSPLGGSERWSSSALPLPLPLPEFFPVQSPESGSWNSGQGRVGSPIGTPVRNSAIITVRKNSDRATTNVSKSLGHNQRRVAIDLTLEVNNGNSGGAGATTFTSPQSLSVNPEKSNPNKEFLFGCSDQLPNNKGRGSPTYPSIERGNYNLTPKNSTSKSAPTSILPSPAVSPRRTHTGNFFVSGLIHHEYQESPSNSSPKVPPLKTAHSSQPSPLHSPTARGSISNPRSPNEVTFLPHPKLQKDSSIDRSESHGHVNAHPLPLPPPLVASSQASPQSLPSNVHHVFEKPYISSMKGQWQKGKRIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQEIKVLSQLKHPNIVQYYGSEIIGDHFYIYLEYVHPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPNWMAPEVIKAAMLNNANPDLALAVDIWSLGCTIIEMLNGKPPWSEFEGHQAMFKVLNKTPPTPEKLSPEGKDFLQCCFQRNPADRPTASVLLDHPFLRSSNDSNVSIPTSSFSTMNLLEKLLSPKDPLDPKGDQAQNSPGTAASNDHLLCRSPSTNIASNVPANAVTNHHFSISRTHKREVLHL 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28648494 28652889 + CcPI632755_08g017400.1 Cco08g1740 186214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1740 711 MobiDBLite consensus disorder prediction 162 182 - -
Cco08g1740 711 SUPERFAMILY Protein kinase-like (PK-like) 341 654 IPR011009 -
Cco08g1740 711 MobiDBLite consensus disorder prediction 196 242 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 1 79 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 256 298 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 41 55 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 256 346 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 649 687 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 661 687 - -
Cco08g1740 711 Pfam Protein kinase domain 365 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1740 711 FunFam Mitogen-activated protein kinase kinase kinase 5 361 661 - -
Cco08g1740 711 SMART serkin_6 364 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1740 711 ProSitePatterns Protein kinases ATP-binding region signature. 370 393 IPR017441 GO:0005524(InterPro)
Cco08g1740 711 MobiDBLite consensus disorder prediction 97 116 - -
Cco08g1740 711 Gene3D Transferase(Phosphotransferase) domain 1 361 652 - -
Cco08g1740 711 MobiDBLite consensus disorder prediction 7 21 - -
Cco08g1740 711 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 33 629 IPR050538 -
Cco08g1740 711 MobiDBLite consensus disorder prediction 162 242 - -
Cco08g1740 711 ProSiteProfiles Protein kinase domain profile. 364 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0981 Cco-Chr5:8613008 Cco08g1740 Cco-Chr8:28648494 8.10E-90 dispersed
Cco06g0604 Cco-Chr6:6570251 Cco08g1740 Cco-Chr8:28648494 2.40E-59 dispersed
Cco08g1740 Cco-Chr8:28648494 Cco10g1179 Cco-Chr10:24408409 6.50E-50 dispersed
Cco04g1421 Cco-Chr4:29627459 Cco08g1740 Cco-Chr8:28648494 9.30E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87056 PF00069 Pkinase 9.40E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1740 - - - 0.0