Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1757 ATGGATGCAAAATTTCAGCGCCTCTCCTCCTCAATCTTTCTTACCCTCAAAGCAGATCGATCCGATGGATCTTCACGCCAAATCCGCGATTTCAACAATGCAATCAAACAGAGAGCTAGGCCGCATCCGGCGGTTCCGACGACGGTGATGGAGCTAACGTGCACCGGAGGATTGCAATTTTTCGTTATCATGGAGATCGATGATTTGGACGACGAGGAGTTGGCATTTTCAAGGAACTATTTTTTGGCTAAGGAATTGGGCGGCTCCAAAAAGAAATCTTCTGGGAAACTCGCCGACATTGACGTCGTCGACGAACAGGAATTGAGGGCGGCGGCGGCGAATATTGAGCCTAAGCACGAGAAAGAGATTGCGGCTCTGATATCAAGCTACAAGAGTTTGTACTCGAAATGGGTCTTTGAGCTCAGATGTGGTTTTGGCCTTCTAATGTATGGATTTGGGTCTAAGAAGGCTTTGATTGAAGATTTTGCTTCGACAGCATTGATGGATTATTCTGTAATAGTTGTTAATGGCTATCTCCAATCAGTGAATATTAAACAGGTTATAGTAGCCATAGCTGAAGTATTGTCAGATCAGTTGAAATCCCGACTCAAAAATGCATCAGGGAGCACACCTAATGTACATCAGTCATTTACTTCGCGATCCATGGATGATCTGTTTACATTTTTGAATGGATCAAATGAGGAAGACAAGGATTGTTTTGTTTGTGTTTTGATACACAACATTGATGGGCCTGGGTTAAGAGATTCTGAAATGCAAGAGTATCTTGCACGAGTTGCTGCCTGTTCCCATGTTCGAATTATTGCCTCCGTTGACCACGTGAATTCACCACTTTTGTGGGACAAGAAAATGGTTCACACACAATTTAACTGGTTATGGTATCATGTTCCAACATTTGCCCCTTACAAGATTGAAGGAATGTTCTTCCCTTTGATTCTTGCACATGGTGGTACTGCTCAAAGTGCGAAAACTGCTACAATAGTTTTACAAAGTTTGACGCCCAATGCACAAAGTGTATTTAAAGTTCTTATAGAACATCAGCTGTCTCATCCTGACGAAGAAGGTATGCCAATCAATAATCTGTATGCAATTTGTCGAGAGCGCTTCCTAGTCAGCAGCCAGCTCGTCATTTCTGCCATTCGCCAAACCCTACGAAGCGAGGAAGAAGAAGAAGAAGAAGAGAACATGGGAATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGACTCTTCCCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGGGTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTCTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTCAGGAGTTACAATCCGGATTGGAGCCGAATGATCCAATCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTGCTCATTTCTGCAAGATGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGCCTTTTCAATTGCTCATAAGTTAGCAGATGGAGATGCTGTGGTTTTTCAACGCATTAAACCTACAGCCTGCAAGGTCTACATCTTCAGGGCGGATGGTTCTATAGAGGATAGTGATTCTAACAGTAGCTAA 1893 44.0 MDAKFQRLSSSIFLTLKADRSDGSSRQIRDFNNAIKQRARPHPAVPTTVMELTCTGGLQFFVIMEIDDLDDEELAFSRNYFLAKELGGSKKKSSGKLADIDVVDEQELRAAAANIEPKHEKEIAALISSYKSLYSKWVFELRCGFGLLMYGFGSKKALIEDFASTALMDYSVIVVNGYLQSVNIKQVIVAIAEVLSDQLKSRLKNASGSTPNVHQSFTSRSMDDLFTFLNGSNEEDKDCFVCVLIHNIDGPGLRDSEMQEYLARVAACSHVRIIASVDHVNSPLLWDKKMVHTQFNWLWYHVPTFAPYKIEGMFFPLILAHGGTAQSAKTATIVLQSLTPNAQSVFKVLIEHQLSHPDEEGMPINNLYAICRERFLVSSQLVISAIRQTLRSEEEEEEEENMGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKPRVTQKQLVVVRRSSRVAKQSAPVYAEVLVDRVAIPRRISRARDFSDQFYASDEARKNAFERAQELQSGLEPNDPICIKSMVRSHVSGCFWLGLPAHFCKMHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKAFSIAHKLADGDAVVFQRIKPTACKVYIFRADGSIEDSDSNSS 630
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 28760854 28767401 + CcPI632755_08g017570.1 Cco08g1757 186231
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1757 630 SMART B3_2 528 619 IPR003340 GO:0003677(InterPro)
Cco08g1757 630 CDD B3_DNA 526 617 IPR003340 GO:0003677(InterPro)
Cco08g1757 630 SUPERFAMILY DNA-binding pseudobarrel domain 522 619 IPR015300 -
Cco08g1757 630 Gene3D - 502 620 IPR015300 -
Cco08g1757 630 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 2 77 383 IPR007220 GO:0000808(InterPro)|GO:0003688(PANTHER)|GO:0005634(InterPro)|GO:0005664(PANTHER)|GO:0006260(InterPro)
Cco08g1757 630 Pfam Origin recognition complex subunit 2 94 383 IPR007220 GO:0000808(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cco08g1757 630 Pfam B3 DNA binding domain 529 618 IPR003340 GO:0003677(InterPro)
Cco08g1757 630 ProSiteProfiles B3 DNA-binding domain profile. 528 619 IPR003340 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1757 Cco-Chr8:28760854 Cco02g0638 Cco-Chr2:6340296 2.90E-57 dispersed
Cco08g1757 Cco-Chr8:28760854 Cco08g1758 Cco-Chr8:28771342 6.50E-102 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59844 PF04084 ORC2 1.60E-81 No_clan Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1757 K02604 - csv:101204992 588.186