Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1758 ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCTGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGAAGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCGATGAGTATCCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA 690 44.2 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDEARKNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28771342 28773217 + CcPI632755_08g017580.1 Cco08g1758 186232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1758 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Cco08g1758 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Cco08g1758 229 Coils Coil 6 26 - -
Cco08g1758 229 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677(InterPro)
Cco08g1758 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Cco08g1758 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Cco08g1758 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Cco08g1758 229 Gene3D - 101 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1374 Cco-Chr2:25938683 Cco08g1758 Cco-Chr8:28771342 2.30E-30 dispersed
Cco05g1160 Cco-Chr5:10690879 Cco08g1758 Cco-Chr8:28771342 2.20E-33 dispersed
Cco08g1757 Cco-Chr8:28760854 Cco08g1758 Cco-Chr8:28771342 6.50E-102 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59845 PF02362 B3 4.90E-13 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1758 - - - 0.0