Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1779 ATGGCTCCAATTTTTTTACTCATTTCCATCTTTCTTCTTCTTCTTCTTCTATTTTTCTTCCAAATTCATAACAACAATAAGTTTCCTAAGAAGAAACTCCCTCCTGGCTCAATGGGTTGGCCTCTAATTGGCGAGACCTTTCATTTTTATTCTCAAGATCCAACCTCCTTCTTTCTTGGAAAACAAAAAAGATACGGGGAGATATTCAAGACCCACATTCATGGATGTCCATGTGTGATGTTAGCGACTCCCGAGGCGGCTCGGTTCGTGCTAGTAACACAGGCTCATCTCTTCAAACCTACATATCCACAAAGTAAAGAGCGATTAATTGGGCCATCGGCTCTGTTTTTCCACCAAAGTGAAACCCATTTGCGTTTGCGTAAGCTAATCCAAAGCTCTCTGTCACCGGACCCTGTTCGAGCCTTAGTCCCTGACATCCACGCCCTAGCCATCTCTGCATTGCCCTCATGGCTCAATGGCCATCTCATTAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTGGGGATTTTGGCAATTTTCGGGCATTTGGAAGACACCAATTACAGAGAGGAACTAATGAAAAACTATTCCATAGTGAACAAAGGCTATAATTCTTTCCCCACCAACATTCCCGGAACGCTTTACAAAAAAGCACTTAAAGCAAGAAAGAGGCTGGGAGAGATCATAAGCTGTATAATCTCAGAGAAAAGGGAGAAAAGAAAAGAATTAGGGGAGAAGAATCTATTAGCGTGTTTGCTAAAATGGAGAGATGAAAATGGAGAAACTTTAAGTGATGAAAAGATCGCCGACAACATCATCGGAGTTCTGTTTGCTGCTCAGGACACGACGGCCAGTGTTCTCACTTGGATTATTAAATATCTACATGATAACCATAAAGTTCTAGAAGCTGTCAAGGTGGAACAAAAGGGAATTGAAGAAGGCATTAATGAGGGGAGCCGACCAATGAGCTGGGCTCAGACACGAAACATGCCCTTTACCAACAAGGTGGTGTTGGAGAGCTTGAGAATGGCGAGTATTATATCGTTTACTTTTAGAGAAGCTGTGGCAGATGTTGAATATAAAGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCACCACAATCCTGACTACTTTGTTGACCCTCATAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACGTTCATGCCATTTGGCAGTGGGGTCCATGCCTGCCCAGGAAATGACCTTGCCAAGCTTGAAATCTTGATCATGATCCACCATCTAGTCACCAAATTCAGGTGGGAATTGGCAGGACAGAGAGATGGGATTCAGCATGGGCCTTTTCCAGTGCCTATAAATGGGCTTCCCATTAGAGTCTGGAGATTATCCACTTGA 1413 42.53 MAPIFLLISIFLLLLLLFFFQIHNNNKFPKKKLPPGSMGWPLIGETFHFYSQDPTSFFLGKQKRYGEIFKTHIHGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALAISALPSWLNGHLINTFHQMKKFSFEVGILAIFGHLEDTNYREELMKNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISCIISEKREKRKELGEKNLLACLLKWRDENGETLSDEKIADNIIGVLFAAQDTTASVLTWIIKYLHDNHKVLEAVKVEQKGIEEGINEGSRPMSWAQTRNMPFTNKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGSGVHACPGNDLAKLEILIMIHHLVTKFRWELAGQRDGIQHGPFPVPINGLPIRVWRLST 470
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 28899018 28903764 - CcPI632755_08g017790.1 Cco08g1779 186253
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1779 470 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PANTHER CYTOCHROME P450 26 32 444 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Cco08g1779 470 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 Pfam Cytochrome P450 34 446 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 CDD CYP90-like 62 465 - -
Cco08g1779 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco08g1779 470 Gene3D Cytochrome P450 22 468 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco08g1779 470 FunFam Abscisic acid 8 23 467 - -
Cco08g1779 470 SUPERFAMILY Cytochrome P450 29 466 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0647 Cco-Chr2:6402125 Cco08g1779 Cco-Chr8:28899018 3.60E-177 dispersed
Cco07g1185 Cco-Chr7:25711183 Cco08g1779 Cco-Chr8:28899018 2.00E-153 dispersed
Cco08g1779 Cco-Chr8:28899018 Cco09g0966 Cco-Chr9:9113550 8.40E-78 dispersed
Cco03g1203 Cco-Chr3:23569078 Cco08g1779 Cco-Chr8:28899018 2.90E-65 transposed
Cco06g1606 Cco-Chr6:26629366 Cco08g1779 Cco-Chr8:28899018 2.40E-64 transposed
Cco10g1299 Cco-Chr10:25917121 Cco08g1779 Cco-Chr8:28899018 7.80E-12 transposed
Cco05g2251 Cco-Chr5:31238407 Cco08g1779 Cco-Chr8:28899018 1.10E-186 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1779 K09843 - vvi:100245540 684.1