Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1779 | ATGGCTCCAATTTTTTTACTCATTTCCATCTTTCTTCTTCTTCTTCTTCTATTTTTCTTCCAAATTCATAACAACAATAAGTTTCCTAAGAAGAAACTCCCTCCTGGCTCAATGGGTTGGCCTCTAATTGGCGAGACCTTTCATTTTTATTCTCAAGATCCAACCTCCTTCTTTCTTGGAAAACAAAAAAGATACGGGGAGATATTCAAGACCCACATTCATGGATGTCCATGTGTGATGTTAGCGACTCCCGAGGCGGCTCGGTTCGTGCTAGTAACACAGGCTCATCTCTTCAAACCTACATATCCACAAAGTAAAGAGCGATTAATTGGGCCATCGGCTCTGTTTTTCCACCAAAGTGAAACCCATTTGCGTTTGCGTAAGCTAATCCAAAGCTCTCTGTCACCGGACCCTGTTCGAGCCTTAGTCCCTGACATCCACGCCCTAGCCATCTCTGCATTGCCCTCATGGCTCAATGGCCATCTCATTAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTGGGGATTTTGGCAATTTTCGGGCATTTGGAAGACACCAATTACAGAGAGGAACTAATGAAAAACTATTCCATAGTGAACAAAGGCTATAATTCTTTCCCCACCAACATTCCCGGAACGCTTTACAAAAAAGCACTTAAAGCAAGAAAGAGGCTGGGAGAGATCATAAGCTGTATAATCTCAGAGAAAAGGGAGAAAAGAAAAGAATTAGGGGAGAAGAATCTATTAGCGTGTTTGCTAAAATGGAGAGATGAAAATGGAGAAACTTTAAGTGATGAAAAGATCGCCGACAACATCATCGGAGTTCTGTTTGCTGCTCAGGACACGACGGCCAGTGTTCTCACTTGGATTATTAAATATCTACATGATAACCATAAAGTTCTAGAAGCTGTCAAGGTGGAACAAAAGGGAATTGAAGAAGGCATTAATGAGGGGAGCCGACCAATGAGCTGGGCTCAGACACGAAACATGCCCTTTACCAACAAGGTGGTGTTGGAGAGCTTGAGAATGGCGAGTATTATATCGTTTACTTTTAGAGAAGCTGTGGCAGATGTTGAATATAAAGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCACCACAATCCTGACTACTTTGTTGACCCTCATAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACGTTCATGCCATTTGGCAGTGGGGTCCATGCCTGCCCAGGAAATGACCTTGCCAAGCTTGAAATCTTGATCATGATCCACCATCTAGTCACCAAATTCAGGTGGGAATTGGCAGGACAGAGAGATGGGATTCAGCATGGGCCTTTTCCAGTGCCTATAAATGGGCTTCCCATTAGAGTCTGGAGATTATCCACTTGA | 1413 | 42.53 | MAPIFLLISIFLLLLLLFFFQIHNNNKFPKKKLPPGSMGWPLIGETFHFYSQDPTSFFLGKQKRYGEIFKTHIHGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALAISALPSWLNGHLINTFHQMKKFSFEVGILAIFGHLEDTNYREELMKNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISCIISEKREKRKELGEKNLLACLLKWRDENGETLSDEKIADNIIGVLFAAQDTTASVLTWIIKYLHDNHKVLEAVKVEQKGIEEGINEGSRPMSWAQTRNMPFTNKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGSGVHACPGNDLAKLEILIMIHHLVTKFRWELAGQRDGIQHGPFPVPINGLPIRVWRLST | 470 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28899018 | 28903764 | - | CcPI632755_08g017790.1 | Cco08g1779 | 186253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1779 | 470 | PRINTS | E-class P450 group I signature | 376 | 400 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | E-class P450 group I signature | 269 | 286 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | E-class P450 group I signature | 336 | 354 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | E-class P450 group I signature | 407 | 417 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | E-class P450 group I signature | 417 | 440 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PANTHER | CYTOCHROME P450 26 | 32 | 444 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cco08g1779 | 470 | PRINTS | P450 superfamily signature | 337 | 348 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | P450 superfamily signature | 280 | 297 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | P450 superfamily signature | 408 | 417 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | PRINTS | P450 superfamily signature | 417 | 428 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | Pfam | Cytochrome P450 | 34 | 446 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | CDD | CYP90-like | 62 | 465 | - | - | |
| Cco08g1779 | 470 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 410 | 419 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco08g1779 | 470 | Gene3D | Cytochrome P450 | 22 | 468 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1779 | 470 | FunFam | Abscisic acid 8 | 23 | 467 | - | - | |
| Cco08g1779 | 470 | SUPERFAMILY | Cytochrome P450 | 29 | 466 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0647 | Cco-Chr2:6402125 | Cco08g1779 | Cco-Chr8:28899018 | 3.60E-177 | dispersed | |
| Cco07g1185 | Cco-Chr7:25711183 | Cco08g1779 | Cco-Chr8:28899018 | 2.00E-153 | dispersed | |
| Cco08g1779 | Cco-Chr8:28899018 | Cco09g0966 | Cco-Chr9:9113550 | 8.40E-78 | dispersed | |
| Cco03g1203 | Cco-Chr3:23569078 | Cco08g1779 | Cco-Chr8:28899018 | 2.90E-65 | transposed | |
| Cco06g1606 | Cco-Chr6:26629366 | Cco08g1779 | Cco-Chr8:28899018 | 2.40E-64 | transposed | |
| Cco10g1299 | Cco-Chr10:25917121 | Cco08g1779 | Cco-Chr8:28899018 | 7.80E-12 | transposed | |
| Cco05g2251 | Cco-Chr5:31238407 | Cco08g1779 | Cco-Chr8:28899018 | 1.10E-186 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1779 | K09843 | - | vvi:100245540 | 684.1 |