Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1780 ATGGACGGTGCTGATGGGACTGTGAGGCTTGGGGCAGTGAACTTGAAGCCGGATCGGAGCGCTTTTGATTTAGGCCCCGATGTGTCTGTTTCGTCTCCGGTCACAAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATAGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGACAGACGAAGAACTCTTCAACGAAGAGCGCAAGAAGCTCAGATGTCGGCTGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGACGACTTTGAGCAATTAACAGTTATTGGTAAAGGTGCATTCGGTGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGGTCGATTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGACAAGTATTCAAGTATACTTTTGAATGACGAAGACCTAACTGCCCAGCAGGCCAAAAATGAAGGTCAAGGTCATACTGACTCTAATGGATCCCATTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTACTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTTCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCAAGAATTTCAGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGCATTCAGTGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACTGTTACTGGAGAACTAGACACTCAGAACTTCGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCTGAAATGCCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACAGATGTGCATTCAAACACATCATCAAAATCACCATCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACAGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1572 42.11 MDGADGTVRLGAVNLKPDRSAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRAQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVGRFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQAKNEGQGHTDSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPRISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDVHSNTSSKSPSLVSLLGRIDLQETVIPEVEQKQEA 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28918367 28923094 - CcPI632755_08g017800.1 Cco08g1780 186254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1780 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1780 523 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1780 523 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Cco08g1780 523 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1780 523 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Cco08g1780 523 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Cco08g1780 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 478 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco08g1780 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1780 523 Pfam Protein kinase domain 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1780 523 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Cco08g1780 523 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Cco08g1780 523 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Cco08g1780 523 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Cco08g1780 523 Coils Coil 57 101 - -
Cco08g1780 523 CDD STKc_NDR_like 106 475 - -
Cco08g1780 523 SMART serkin_6 108 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1780 523 Gene3D Transferase(Phosphotransferase) domain 1 310 429 - -
Cco08g1780 523 CDD MobB_NDR_LATS-like 42 103 - -
Cco08g1780 523 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
Cco08g1780 523 SMART pkinase_C_6 412 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1864 Cco-Chr6:28871758 Cco08g1780 Cco-Chr8:28918367 4.60E-56 dispersed
Cco08g1780 Cco-Chr8:28918367 Cco09g0775 Cco-Chr9:7115546 5.90E-173 dispersed
Cco08g1780 Cco-Chr8:28918367 Cco05g2046 Cco-Chr5:29528296 4.30E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87057 PF00069 Pkinase 3.70E-64 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1780 K08790 - csv:101222805 1006.51