Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1784 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGAGGAGGCGGAAGACCTCCGGCGAACTATCCATTGGCGCGACAATCATCGATCTACTCGCTGACCTTCGATGAGTTTCAGAGCATGGGGAGTATAGGCAAGGATTTTGGGTCGATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGTTGATAAAGAAGGGGCTGGTAGTGTTGGTCGTAGTGGTGGGTATTTGCAGAGACAGGGCTCCTTGACGCTGCCTCGGACACTCAGCCAGAAGAAGGTTGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGGCTACTGTTGCTTCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAGGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAATAACACTGGTTTTGAAATTGGTTTTCAGCGGCAGGCTAAAGTTCCTGAGAATAATAATCACATTCCGATTCAATCGTCGAACTTATCACTGAATGTCAATGGAGTCAGAACACATCAGCCGCAGCCAATTTTTCCAAAGCAGCCTGCTGTGACATATGGATGTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGGGGAATTATGGGGATTGGAGATCAAGGGTTGAATACGAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATATAGCAGCTGCTCCGTTACCTATTGCAACAGAATCGCCAAGGGACCAACTATCATCTGATGGGATTGGTAAAAGCAATGGTGATACCTCGTCTGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGAGGAGAAGTAACGGAATTGTCGACAAGGTTGTTGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCGCGGGCTCGAAAGCAGGCCTACACAATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATAAAGAAGCGATGCTTAAGACGAACGCAGACGGGCCCATGGTGCCGTGTAGCATATGTCTCAAGGTGTCTTGCTTGCAGAGTATCGTATAACGTATTTGCTTCGAAGTGGATCATCAAGAGTTCAGTAGCTTTTGAGTGGAAGCAGAAACACACATAG 1350 47.11 MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVDKEGAGSVGRSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFEIGFQRQAKVPENNNHIPIQSSNLSLNVNGVRTHQPQPIFPKQPAVTYGCQLALPSDGQLASPGIRGGIMGIGDQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPRDQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPWCRVAYVSRCLACRVSYNVFASKWIIKSSVAFEWKQKHT 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28974010 28976804 + CcPI632755_08g017840.1 Cco08g1784 186258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1784 449 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1784 449 MobiDBLite consensus disorder prediction 1 26 - -
Cco08g1784 449 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 331 388 - -
Cco08g1784 449 CDD bZIP_plant_BZIP46 333 385 - -
Cco08g1784 449 MobiDBLite consensus disorder prediction 286 315 - -
Cco08g1784 449 SMART brlzneu 329 393 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1784 449 Gene3D - 331 387 - -
Cco08g1784 449 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1784 449 Coils Coil 349 386 - -
Cco08g1784 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1784 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1784 449 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 410 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cco08g1784 449 MobiDBLite consensus disorder prediction 287 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0656 Cco-Chr2:6542568 Cco08g1784 Cco-Chr8:28974010 7.00E-92 dispersed
Cco08g0999 Cco-Chr8:21828823 Cco08g1784 Cco-Chr8:28974010 6.10E-32 dispersed
Cco08g1784 Cco-Chr8:28974010 Cco09g1567 Cco-Chr9:23511121 1.30E-14 dispersed
Cco08g1784 Cco-Chr8:28974010 Cco10g1890 Cco-Chr10:32477112 4.60E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59846 PF00170 bZIP_1 4.30E-13 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1784 K14432 - csv:101223043 711.064