Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1786 ATGGATATGGCGGACGCGGAGGATGCAATTAAGTGGGGAAGAGATGAGATGGATATTGTGAGTGTGATTGAGCAGATTGGAAAATTTGAAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTATGTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGGTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCGCCAACCACCCCCCCTCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCCGCTGGGACTACTAATTATAATAAAAAGCATCACTACCTGGAGGATGCTTCATTTTAA 756 47.88 MDMADAEDAIKWGRDEMDIVSVIEQIGKFEENLEYNEVAASSSDFAFGSPNIGVCVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAAANHPPSAAAYPFPTAIFSAGTTNYNKKHHYLEDASF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28991233 28992314 - CcPI632755_08g017860.1 Cco08g1786 186260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1786 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 210 IPR036638 GO:0046983(InterPro)
Cco08g1786 251 Pfam Helix-loop-helix DNA-binding domain 161 202 IPR011598 GO:0046983(InterPro)
Cco08g1786 251 Gene3D - 149 211 IPR036638 GO:0046983(InterPro)
Cco08g1786 251 FunFam BHLH transcription factor 155 219 - -
Cco08g1786 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 92 235 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1786 251 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Cco08g1786 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1369 Cco-Chr2:25832563 Cco08g1786 Cco-Chr8:28991233 3.60E-38 dispersed
Cco07g1428 Cco-Chr7:28369481 Cco08g1786 Cco-Chr8:28991233 2.00E-22 dispersed
Cco08g1786 Cco-Chr8:28991233 Cco09g0037 Cco-Chr9:340734 3.80E-29 dispersed
Cco08g1786 Cco-Chr8:28991233 Cco08g1792 Cco-Chr8:29054026 1.20E-06 proximal
Cco04g1305 Cco-Chr4:28325894 Cco08g1786 Cco-Chr8:28991233 1.30E-36 transposed
Cco05g2262 Cco-Chr5:31350406 Cco08g1786 Cco-Chr8:28991233 5.80E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59847 PF00010 HLH 1.60E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1786 - - - 0.0