Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1786 | ATGGATATGGCGGACGCGGAGGATGCAATTAAGTGGGGAAGAGATGAGATGGATATTGTGAGTGTGATTGAGCAGATTGGAAAATTTGAAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTATGTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGGTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCGCCAACCACCCCCCCTCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCCGCTGGGACTACTAATTATAATAAAAAGCATCACTACCTGGAGGATGCTTCATTTTAA | 756 | 47.88 | MDMADAEDAIKWGRDEMDIVSVIEQIGKFEENLEYNEVAASSSDFAFGSPNIGVCVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAAANHPPSAAAYPFPTAIFSAGTTNYNKKHHYLEDASF | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28991233 | 28992314 | - | CcPI632755_08g017860.1 | Cco08g1786 | 186260 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1786 | 251 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 210 | IPR036638 | GO:0046983(InterPro) | |
Cco08g1786 | 251 | Pfam | Helix-loop-helix DNA-binding domain | 161 | 202 | IPR011598 | GO:0046983(InterPro) | |
Cco08g1786 | 251 | Gene3D | - | 149 | 211 | IPR036638 | GO:0046983(InterPro) | |
Cco08g1786 | 251 | FunFam | BHLH transcription factor | 155 | 219 | - | - | |
Cco08g1786 | 251 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 92 | 235 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1786 | 251 | SMART | finulus | 158 | 207 | IPR011598 | GO:0046983(InterPro) | |
Cco08g1786 | 251 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 152 | 201 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1369 | Cco-Chr2:25832563 | Cco08g1786 | Cco-Chr8:28991233 | 3.60E-38 | dispersed | |
Cco07g1428 | Cco-Chr7:28369481 | Cco08g1786 | Cco-Chr8:28991233 | 2.00E-22 | dispersed | |
Cco08g1786 | Cco-Chr8:28991233 | Cco09g0037 | Cco-Chr9:340734 | 3.80E-29 | dispersed | |
Cco08g1786 | Cco-Chr8:28991233 | Cco08g1792 | Cco-Chr8:29054026 | 1.20E-06 | proximal | |
Cco04g1305 | Cco-Chr4:28325894 | Cco08g1786 | Cco-Chr8:28991233 | 1.30E-36 | transposed | |
Cco05g2262 | Cco-Chr5:31350406 | Cco08g1786 | Cco-Chr8:28991233 | 5.80E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59847 | PF00010 | HLH | 1.60E-06 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1786 | - | - | - | 0.0 |