Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1789 | ATGTCCAAGAACCGCGGCGGACTCCTCCCAAATTCCCTCGCGGCCATTAATTTTCTCCAAGGGAAGAAGAACCCTGCACTTTATCAGAGGCGTGCACCAATCAGCAATCATACAAATGCTGCTTTTCAATATCCTGCTGTGCGATCCTGTGTTGCTACTACCGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCGGAGAAAGGTAACTTTATGATCGACTTTCTTATGGGTGGCGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGACGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAAGACGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCCGGTCTCTACCGGGGATTTAACATTTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACTGGGAAGATGCAGGATAGCTTCTTCGCTAGCTTTGCCTTGGGTTGGCTCATCACCAATGGTGCCGGTCTTGCATCTTACCCAATTGACACCGTTCGTAGAAGAATGATGATGACATCTGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATTTTGAAGAACGAAGGTGCCAAGTCTCTCTTTAAGGGTGCTGGTGCGAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATCGTCTTCGGGAAGAAATACGGATCGGGTGGTGCTTAA | 1134 | 47.53 | MSKNRGGLLPNSLAAINFLQGKKNPALYQRRAPISNHTNAAFQYPAVRSCVATTDLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29035483 | 29038238 | + | CcPI632755_08g017890.1 | Cco08g1789 | 186263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1789 | 377 | Pfam | Mitochondrial carrier protein | 75 | 172 | IPR018108 | - | |
| Cco08g1789 | 377 | Pfam | Mitochondrial carrier protein | 280 | 368 | IPR018108 | - | |
| Cco08g1789 | 377 | Pfam | Mitochondrial carrier protein | 180 | 274 | IPR018108 | - | |
| Cco08g1789 | 377 | SUPERFAMILY | Mitochondrial carrier | 75 | 362 | IPR023395 | - | |
| Cco08g1789 | 377 | PRINTS | Mitochondrial carrier protein signature | 195 | 213 | IPR002067 | GO:0055085(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Mitochondrial carrier protein signature | 245 | 263 | IPR002067 | GO:0055085(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Mitochondrial carrier protein signature | 93 | 107 | IPR002067 | GO:0055085(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Mitochondrial carrier protein signature | 143 | 163 | IPR002067 | GO:0055085(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Mitochondrial carrier protein signature | 289 | 311 | IPR002067 | GO:0055085(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Mitochondrial carrier protein signature | 80 | 93 | IPR002067 | GO:0055085(InterPro) | |
| Cco08g1789 | 377 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 180 | 272 | IPR018108 | - | |
| Cco08g1789 | 377 | FunFam | ADP,ATP carrier protein, mitochondrial | 78 | 373 | - | - | |
| Cco08g1789 | 377 | PRINTS | Adenine nucleotide translocator signature | 285 | 301 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Adenine nucleotide translocator signature | 180 | 193 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Adenine nucleotide translocator signature | 154 | 166 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Adenine nucleotide translocator signature | 77 | 89 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cco08g1789 | 377 | PRINTS | Adenine nucleotide translocator signature | 121 | 142 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cco08g1789 | 377 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 75 | 168 | IPR018108 | - | |
| Cco08g1789 | 377 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 280 | 366 | IPR018108 | - | |
| Cco08g1789 | 377 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 73 | 374 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| Cco08g1789 | 377 | Gene3D | Mitochondrial carrier domain | 78 | 373 | IPR023395 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1747 | Cco-Chr1:30231665 | Cco08g1789 | Cco-Chr8:29035483 | 8.00E-109 | dispersed | |
| Cco08g1789 | Cco-Chr8:29035483 | Cco08g1885 | Cco-Chr8:29877222 | 5.70E-53 | dispersed | |
| Cco08g1789 | Cco-Chr8:29035483 | Cco08g1790 | Cco-Chr8:29042744 | 2.40E-200 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1789 | K05863 | - | csv:101203484 | 672.544 |