Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1790 | ATGCATTTCCTCTGTAGTTTATATGCTTTGAGTCAGATCTTAATCTGGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTATAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAATATCCTGCTGTGCGATCCTGTGTTGCTACTACCAATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCGGAGAAAGGTAACTTTATGATCGACTTTCTTATGGGTGGCGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGACGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAAGACGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCCGGTCTCTACCGGGGATTTAACATTTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACTGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCTTGGGTTGGCTCATCACCAATGGTGCTGGTCTCGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATCGTCTTTGGGAAGAAATATGGATCTGGTGGTGCCTAA | 1233 | 46.8 | MHFLCSLYALSQILIWEEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGYRNPALYQRRASISNHTNAAFQYPAVRSCVATTNLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29042744 | 29044577 | + | CcPI632755_08g017900.1 | Cco08g1790 | 186264 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1790 | 410 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 106 | 407 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
Cco08g1790 | 410 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 108 | 201 | IPR018108 | - | |
Cco08g1790 | 410 | Gene3D | Mitochondrial carrier domain | 111 | 406 | IPR023395 | - | |
Cco08g1790 | 410 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 213 | 305 | IPR018108 | - | |
Cco08g1790 | 410 | PRINTS | Mitochondrial carrier protein signature | 322 | 344 | IPR002067 | GO:0055085(InterPro) | |
Cco08g1790 | 410 | PRINTS | Mitochondrial carrier protein signature | 228 | 246 | IPR002067 | GO:0055085(InterPro) | |
Cco08g1790 | 410 | PRINTS | Mitochondrial carrier protein signature | 176 | 196 | IPR002067 | GO:0055085(InterPro) | |
Cco08g1790 | 410 | PRINTS | Mitochondrial carrier protein signature | 278 | 296 | IPR002067 | GO:0055085(InterPro) | |
Cco08g1790 | 410 | PRINTS | Mitochondrial carrier protein signature | 113 | 126 | IPR002067 | GO:0055085(InterPro) | |
Cco08g1790 | 410 | PRINTS | Mitochondrial carrier protein signature | 126 | 140 | IPR002067 | GO:0055085(InterPro) | |
Cco08g1790 | 410 | FunFam | ADP,ATP carrier protein, mitochondrial | 111 | 406 | - | - | |
Cco08g1790 | 410 | Pfam | Mitochondrial carrier protein | 313 | 401 | IPR018108 | - | |
Cco08g1790 | 410 | Pfam | Mitochondrial carrier protein | 108 | 205 | IPR018108 | - | |
Cco08g1790 | 410 | Pfam | Mitochondrial carrier protein | 213 | 307 | IPR018108 | - | |
Cco08g1790 | 410 | SUPERFAMILY | Mitochondrial carrier | 108 | 395 | IPR023395 | - | |
Cco08g1790 | 410 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 313 | 399 | IPR018108 | - | |
Cco08g1790 | 410 | PRINTS | Adenine nucleotide translocator signature | 154 | 175 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
Cco08g1790 | 410 | PRINTS | Adenine nucleotide translocator signature | 110 | 122 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
Cco08g1790 | 410 | PRINTS | Adenine nucleotide translocator signature | 318 | 334 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
Cco08g1790 | 410 | PRINTS | Adenine nucleotide translocator signature | 213 | 226 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
Cco08g1790 | 410 | PRINTS | Adenine nucleotide translocator signature | 187 | 199 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0245 | Cco-Chr7:2515427 | Cco08g1790 | Cco-Chr8:29042744 | 6.80E-163 | dispersed | |
Cco08g1790 | Cco-Chr8:29042744 | Cco08g1885 | Cco-Chr8:29877222 | 8.10E-53 | dispersed | |
Cco08g1789 | Cco-Chr8:29035483 | Cco08g1790 | Cco-Chr8:29042744 | 2.40E-200 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1790 | K05863 | - | csv:101203733 | 734.947 |