Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1790 ATGCATTTCCTCTGTAGTTTATATGCTTTGAGTCAGATCTTAATCTGGGAAGAAGTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTACCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCGAGGGTTGCTTCGGGTTTCCGTTCTTGTGATGATGGCTATAGGAACCCTGCACTTTATCAGAGGCGTGCATCAATCAGCAATCATACAAATGCTGCTTTTCAATATCCTGCTGTGCGATCCTGTGTTGCTACTACCAATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTTGTTGCTGCCCCTGCGGAGAAAGGTAACTTTATGATCGACTTTCTTATGGGTGGCGTGTCTGCTGCTGTGTCCAAGACAGCTGCTGCCCCGATTGAGCGTGTCAAGCTCTTGATTCAAAATCAGGACGAGATGATTAAATCTGGACGTTTGTCTGAGCCATACAAGGGTATTGGCGATTGTTTCAAGCGCACAATCCAAGACGAGGGTTTTGGTTCATTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTCGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCCGGTGGTGCTGCTGGTGCTTCATCCCTTCTTTTTGTTTACTCTCTTGACTATGCCCGTACCCGATTAGCAAACGACGCCAAAGCTGCCAAGAAAGGTGGAGAAAGGCAATTCAATGGACTGGTTGATGTCTACAGGAAGACATTGCAGTCTGATGGTATTGCCGGTCTCTACCGGGGATTTAACATTTCTTGTGTTGGTATCATCGTTTACCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCCGTTTTATTGACTGGGAAGATGCAGGATAGCTTCTTCGCTAGTTTTGCCTTGGGTTGGCTCATCACCAATGGTGCTGGTCTCGCATCCTACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTTGCCGGTTATGATAAGTTGCAGGTGATCGTCTTTGGGAAGAAATATGGATCTGGTGGTGCCTAA 1233 46.8 MHFLCSLYALSQILIWEEVAMADQVQHPTIYQKVAGQLSLQSRVASGFRSCDDGYRNPALYQRRASISNHTNAAFQYPAVRSCVATTNLSRVASTASPIFVAAPAEKGNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTIQDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29042744 29044577 + CcPI632755_08g017900.1 Cco08g1790 186264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1790 410 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 106 407 IPR002113 GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cco08g1790 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 201 IPR018108 -
Cco08g1790 410 Gene3D Mitochondrial carrier domain 111 406 IPR023395 -
Cco08g1790 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 305 IPR018108 -
Cco08g1790 410 PRINTS Mitochondrial carrier protein signature 322 344 IPR002067 GO:0055085(InterPro)
Cco08g1790 410 PRINTS Mitochondrial carrier protein signature 228 246 IPR002067 GO:0055085(InterPro)
Cco08g1790 410 PRINTS Mitochondrial carrier protein signature 176 196 IPR002067 GO:0055085(InterPro)
Cco08g1790 410 PRINTS Mitochondrial carrier protein signature 278 296 IPR002067 GO:0055085(InterPro)
Cco08g1790 410 PRINTS Mitochondrial carrier protein signature 113 126 IPR002067 GO:0055085(InterPro)
Cco08g1790 410 PRINTS Mitochondrial carrier protein signature 126 140 IPR002067 GO:0055085(InterPro)
Cco08g1790 410 FunFam ADP,ATP carrier protein, mitochondrial 111 406 - -
Cco08g1790 410 Pfam Mitochondrial carrier protein 313 401 IPR018108 -
Cco08g1790 410 Pfam Mitochondrial carrier protein 108 205 IPR018108 -
Cco08g1790 410 Pfam Mitochondrial carrier protein 213 307 IPR018108 -
Cco08g1790 410 SUPERFAMILY Mitochondrial carrier 108 395 IPR023395 -
Cco08g1790 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 313 399 IPR018108 -
Cco08g1790 410 PRINTS Adenine nucleotide translocator signature 154 175 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cco08g1790 410 PRINTS Adenine nucleotide translocator signature 110 122 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cco08g1790 410 PRINTS Adenine nucleotide translocator signature 318 334 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cco08g1790 410 PRINTS Adenine nucleotide translocator signature 213 226 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cco08g1790 410 PRINTS Adenine nucleotide translocator signature 187 199 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0245 Cco-Chr7:2515427 Cco08g1790 Cco-Chr8:29042744 6.80E-163 dispersed
Cco08g1790 Cco-Chr8:29042744 Cco08g1885 Cco-Chr8:29877222 8.10E-53 dispersed
Cco08g1789 Cco-Chr8:29035483 Cco08g1790 Cco-Chr8:29042744 2.40E-200 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1790 K05863 - csv:101203733 734.947