Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1791 | ATGTCTAATTATGCCTTCTTGAATGACCAGCTCTCGAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTTGTTTTGGGTATTTGCGTTGGTGCCGCCATTGTTATCGTTCTGTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTTCCAATAAATCTAAACCCTCTTTGAACCCCACTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATCGATCATTCTCGGAATCCAACTCATTCTGACTCTAAAGTTCAATTAGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCAACGCTGCTTGAGACGGAAGAAGGGAGCCCACCTAGTGGTCGCCATAGAATTCACATTGAAATTGGTAAGGACCACCGGATTTCGTACCCGGAGAGAGGTGGCGGTTCGTCTCACGGTAGCGGAGAGGCTAGGTCTGGTGATCAGGCGCCAACGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTTGAGTATGCTACTAATAGCTTTGCGGATGAGAATGTAATTGGTGAGGGCGGATATGGTATTGTGTACCGTGGCGTTATGGAGGACAACACTGTGGTTGCCATAAAAAATTTGCTCAATAACAGAGGACAGGCTGAGAAGGAGTTTAAAGTTGAAGTGGAAGCAATTGGACGCGTACGCCACAAGAATCTGGTGCGTTTGCTCGGCTACTGTGCTGAAGGAGCTCATAGGATACTTGTCTATGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTCACATGGAACATTCGAATGAATATAATTGTTGGAACAGCAAAAGGGTTAACATACCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGGCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTATGTAACAACTCGGGTGATGGGAACTTTTGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTCGGTATCCTCATCATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTAAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGCTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGAGCAACCCAAGCAAGCCGACATCTACGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTACCTGTAA | 1572 | 46.31 | MSNYAFLNDQLSKRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSSNKSKPSLNPTIPNVSKEIQEIRIDHSRNPTHSDSKVQLASNPEPLPEAEPLATLLETEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPTAVPEVSHLGWGHWYTLRELEYATNSFADENVIGEGGYGIVYRGVMEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWNIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLRRKQELEEQQPREPHTLRYL | 523 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29047106 | 29049730 | - | CcPI632755_08g017910.1 | Cco08g1791 | 186265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1791 | 523 | Gene3D | Transferase(Phosphotransferase) domain 1 | 257 | 463 | - | - | |
Cco08g1791 | 523 | ProSiteProfiles | Protein kinase domain profile. | 181 | 439 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1791 | 523 | MobiDBLite | consensus disorder prediction | 125 | 157 | - | - | |
Cco08g1791 | 523 | Pfam | Protein kinase domain | 183 | 450 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1791 | 523 | MobiDBLite | consensus disorder prediction | 482 | 523 | - | - | |
Cco08g1791 | 523 | SUPERFAMILY | Protein kinase-like (PK-like) | 158 | 453 | IPR011009 | - | |
Cco08g1791 | 523 | CDD | STKc_IRAK | 187 | 453 | - | - | |
Cco08g1791 | 523 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 256 | - | - | |
Cco08g1791 | 523 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 303 | 315 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco08g1791 | 523 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 161 | 256 | - | - | |
Cco08g1791 | 523 | PANTHER | OS01G0323000 PROTEIN | 6 | 488 | IPR052232 | - | |
Cco08g1791 | 523 | ProSitePatterns | Protein kinases ATP-binding region signature. | 187 | 209 | IPR017441 | GO:0005524(InterPro) | |
Cco08g1791 | 523 | MobiDBLite | consensus disorder prediction | 499 | 523 | - | - | |
Cco08g1791 | 523 | SMART | serkin_6 | 181 | 459 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1791 | 523 | FunFam | Putative receptor-like serine/threonine-protein kinase | 257 | 467 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0550 | Cco-Chr2:5252539 | Cco08g1791 | Cco-Chr8:29047106 | 2.00E-140 | dispersed | |
Cco05g0170 | Cco-Chr5:1351734 | Cco08g1791 | Cco-Chr8:29047106 | 6.10E-171 | dispersed | |
Cco05g0998 | Cco-Chr5:8815113 | Cco08g1791 | Cco-Chr8:29047106 | 1.70E-73 | dispersed | |
Cco08g1791 | Cco-Chr8:29047106 | Cco09g2451 | Cco-Chr9:38678000 | 2.30E-145 | dispersed | |
Cco11g1560 | Cco-Chr11:28491452 | Cco08g1791 | Cco-Chr8:29047106 | 1.30E-24 | dispersed | |
Cco08g1791 | Cco-Chr8:29047106 | Cco04g1449 | Cco-Chr4:29903922 | 1.00E-201 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87058 | PF00069 | Pkinase | 3.00E-47 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1791 | - | - | - | 0.0 |