Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1793 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACAATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAATCGAATACCAGATTATTTATTACCTACTTCTGATATAAATTCTGGATATGTAAGCTCTGTGAGCCATGAACAACGAAGTTTGAGCAGATGGAGTTTGGGTGAACCTAGCTCTTGTGATATGCAAACCGAGGTTCTGCCTGATGAGCAGAAAGCTGAAATTGGATGGTCTTCACTGACTCGTGATGCAGATGGTCCTGTTACCGAAAACCGACTCTGTGAGCCATCAAATAATCCGTCACTGGGTCATGTGAACTTGAGCCCACTGATTATACAAAATTCTAATTCTAACTCTAATGCTATTCCTCATAATCTCAACTTAAATGCAAGTTTTGCTAGTCATGGAGGCGACAATAGCAGAGTTAATGAAGGTACTAATGTATATAAATCTAGTGGATCAGAAGAAGGGGGGATTTTGTGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTACAAATGATGGTAGAGCAGGCTCTTCCTTGGATGGGCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGTGGAAGCAGTAACTACTCGCAGCATATTGAAAGTGGCTCGGAGCCCCATCTTCCAGTGTTCCCTGGTCGCTACAACACAGGCAGTAGGTTGAGCATACCTCCTCCACCAGCACGAATGAATCAGGCCCCTGTACGAGGTGCAGGTGAACTGACTTCCAACAGCTTCTCTGAGTCAATTGTTGCGGAAAGCTCAGACAGTTCTCATAGAAACTATCGTGTAAGGATTAGTTCATCAAATGCTCAAGATTCTTTTGCATCAGCAGGAACTGCTGTTAGGCATCCTGGGCCACCATCTTCCCAGCTGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATGTATCAGCTCAAGGTCAGCCAATTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCAGTTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAAGAGGTGAGACCAAGCAACATGGGAAGAACCGTATCCGAACATCCTATGTTTGTCCCGGCAAATGAGCTGAGGAGTTTGGTTCGAAGTCCATCAAGTAGAGCTTTAGCATCTTCGAACTTGTCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTACAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAGAATTCTCCGACACAGTTTCCGAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTGCTTCTGCTACAAATGAGTCTGGAGGAAGGACAAATAATTATTCACAGCGATCAGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGACACCATTTATTGCAACCAAGGTCTGCATTATGGATGGAAAGAAGAGGTGATGGTGGACTTGGTCTTCCCTATTCATTACGAACTTTGGCTACTTCCGGTGAAGGAAGTGACAATAACAGACTTGTATCTGAGCACATTCGCAATGTCTTGGGACTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTCGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGACGTTGATAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGTATTGGGAATGTCAACACAGGACTAAGTGAAGAGACAATAGTTGCTCGACTGAAACAAAAGAAGCGTGTGAATGCTGTTGACTCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTCGAAGGAGAAGACATTGGAACGCTGGAATGCGGGCATGACTTCCACACAGCTTGTATTAAGCAGTGGCTGATGCAAAAGAATCTGTGCCCCATATGCAAAACAACTGGTTTGGCAAGCCGAGAATGA 2142 45.19 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDINSGYVSSVSHEQRSLSRWSLGEPSSCDMQTEVLPDEQKAEIGWSSLTRDADGPVTENRLCEPSNNPSLGHVNLSPLIIQNSNSNSNAIPHNLNLNASFASHGGDNSRVNEGTNVYKSSGSEEGGILCSSASDPLLLPSGNSGLPVVTNDGRAGSSLDGRRAPCKRKSIEGNVAQSSLSGSSNYSQHIESGSEPHLPVFPGRYNTGSRLSIPPPPARMNQAPVRGAGELTSNSFSESIVAESSDSSHRNYRVRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPAEHVLDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSTSRSGSSSSSAGERQVVQREEVRPSNMGRTVSEHPMFVPANELRSLVRSPSSRALASSNLSIPGNVASTSRVGTSSGVHPSSGPWIPPENSPTQFPRRLTEYVRRQLFASATNESGGRTNNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLATSGEGSDNNRLVSEHIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVARLKQKKRVNAVDSQVEEEPCCVCQEEYVEGEDIGTLECGHDFHTACIKQWLMQKNLCPICKTTGLASRE 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29060594 29064383 - CcPI632755_08g017930.1 Cco08g1793 186267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1793 713 Pfam Ring finger domain 664 705 IPR001841 -
Cco08g1793 713 MobiDBLite consensus disorder prediction 492 527 - -
Cco08g1793 713 ProSiteProfiles Zinc finger RING-type profile. 664 705 IPR001841 -
Cco08g1793 713 MobiDBLite consensus disorder prediction 437 463 - -
Cco08g1793 713 MobiDBLite consensus disorder prediction 1 29 - -
Cco08g1793 713 MobiDBLite consensus disorder prediction 492 519 - -
Cco08g1793 713 MobiDBLite consensus disorder prediction 437 476 - -
Cco08g1793 713 MobiDBLite consensus disorder prediction 223 243 - -
Cco08g1793 713 MobiDBLite consensus disorder prediction 192 249 - -
Cco08g1793 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 708 IPR013083 -
Cco08g1793 713 FunFam E3 ubiquitin-protein ligase MBR2 632 709 - -
Cco08g1793 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 710 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
Cco08g1793 713 MobiDBLite consensus disorder prediction 375 397 - -
Cco08g1793 713 MobiDBLite consensus disorder prediction 373 418 - -
Cco08g1793 713 SUPERFAMILY RING/U-box 658 707 - -
Cco08g1793 713 SMART ring_2 664 704 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1793 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1674 Cco-Chr1:29475003 Cco08g1793 Cco-Chr8:29060594 4.10E-26 dispersed
Cco07g1064 Cco-Chr7:24136064 Cco08g1793 Cco-Chr8:29060594 8.00E-31 dispersed
Cco08g0726 Cco-Chr8:18839047 Cco08g1793 Cco-Chr8:29060594 3.50E-15 dispersed
Cco08g1793 Cco-Chr8:29060594 Cco11g1826 Cco-Chr11:30928834 5.10E-26 dispersed
Cco08g1793 Cco-Chr8:29060594 Cco08g1426 Cco-Chr8:26154579 8.00E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55